Genome sequence and comparative analysis of Jiangella alba YIM 61503T isolated from a medicinal plant Maytenus austroyunnanensis

Jiao, Jian-Yu; Salam, Nimaichand; Liu, Lan; Rao, Manik Prabhu Narsing; Zhang, Xiao-Tong; Fang, Bao-Zhu; Han, Ming-Xian; Zhang, Zi-Tong; Chen, Jing; Zhao, Jiao; Zhou, Yu; Alkhalifah, Dalal Hussien M.; Liu, Qing; Xiao, Min; Klenk, Hans-Peter; et. al.

Abstract

A draft genome sequence of Jiangella alba YIM 61503(T) revealed a genome size of 7,664,864 bp arranged in 33 scaffolds. The genome was predicted to contain 7196 predicted genes, including 51 coding for RNA. Phylogenetic and comparative analyses of the draft genome of J. alba YIM 61503(T) with the available genomes of other Jiangella species suggested a proximal similarity between strains J. alba YIM 61503(T) and J. muralis DSM 45357(T), while indicating a high divergence between J. gansuensis YIM 002(T) and other Jiangella species. The genome of J. alba YIM 61503(T) also revealed genes involved in indole-3-acetic acid biosynthesis and an alkylresorcinols gene cluster. Further, detection of phosphotransferase genes in the genome of all Jiangella species indicated that they can uptake and phosphorylate sugars. The presences of TreX-Z, TreS and OtsA-OtsB genes in some of the Jiangella strains also indicated a possible mechanism for their tolerance of high salinity. Besides providing new insights into its genetic features, our results suggested that J. alba YIM 61503(T) could be a potential strain for further genome mining studies. The release of this genome may, therefore, provide a better prospect for understanding "evolutionary taxonomy" about this genus in future.

Más información

Título según WOS: ID WOS:000430722100004 Not found in local WOS DB
Título de la Revista: ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY
Volumen: 111
Número: 5
Editorial: Springer
Fecha de publicación: 2018
Página de inicio: 667
Página final: 678
DOI:

10.1007/s10482-017-1010-8

Notas: ISI