High genetic differentiation of grapevine rootstock varieties determined by molecular markers and artificial neural networks

Costa, MO; Capel, LS; Maldonado, C; Mora, F; Mangolin, CA; Machado, MDPD

Keywords: clustering methods, RAPD-SSR loci, self-organizing map algorithm

Abstract

The genetic differentiation of grapevine rootstock varieties was inferred by the Artificial Neural Network approach based on the Self-Organizing Map algorithm. A combination of RAPD and SSR molecular markers, yielding polymorphic informative loci, was used to determine the genetic characterization among the rootstock varieties 420-A, Schwarzmann, IAC-766 Campinas, Traviu, Kober 5BB, and IAC -572 Jales. A neural network algorithm, based on allelic frequency, showed that the individual grapevine rootstocks (n = 64) were grouped into three genetically differentiated clusters. Cluster 1 included only the Kober 5BB rootstock, Cluster 2 included rootstocks of the varieties Traviu and IAC -572, and Cluster 3 included 420-A, Schwarzmann and IAC-766 plants. Evidence from the current study indicates that, despite the morphological similarities of the 420-A and Kober 5BB varieties, which share the same genetic origin, two new varieties were generated that are genetically divergent and show differences in performance.

Más información

Título según WOS: High genetic differentiation of grapevine rootstock varieties determined by molecular markers and artificial neural networks
Volumen: 42
Fecha de publicación: 2020
Idioma: English
DOI:

10.4025/actasciagron.v42i1.43475

Notas: ISI