A low-cost platform suitable for sequencing-based recovery of natural variation in understudied plants

Howard-Till, Rachel; Osorio, Claudia E.; Till, Bradley J.

Abstract

Genetic characterization of wild and cultivated plants provides valuable knowledge for conservation and agriculture. DNA sequencing technologies are improving and costs are dropping. Yet, analysis of many species is hindered because they grow in regions that lack infrastructure for advanced molecular biology. We developed and adapted low-cost methods that address these issues. Tissue is collected and stored in silica-gel, avoiding the need for liquid nitrogen and freezers. We have optimized low-cost home-made DNA extraction to increase yields, reduce costs, and produce DNA suitable for next generation sequencing. We also describe how to build a gel documentation system for DNA quantification. As a proof of principle, we use these methods to evaluate wild Berberis darwinii, native to Southern Chile.

Más información

Título de la Revista: bioRxiv
Fecha de publicación: 2020
DOI:

https://doi.org/10.1101/2020.06.24.169276