Generation and analysis of an Eucalyptus globulus cDNA library constructed from seedlings subjected to low temperature conditions

Rasmussen-Poblete, S; Valdés J.; Gamboa, MC; Valenzuela PDT; Krauskopf, E

Abstract

Eucalyptus globulus is the most important commercial temperate hardwood in the world because of its wood properties and due to its characteristics for biofuel production. However, only a very low number of expressed sequence tags (ESTs) are publicly available for this tree species. We constructed a cDNA from E. globulus seedlings subjected to low temperature and sequenced 9,913 randomly selected clones, generating 8,737 curated ESTs. The assembly produced 1,062 contigs and 3,879 singletons forming a Eucalyptus unigene set. Based on BLASTX analysis, 89.3% of the contigs and 88.5% of the singletons had significant similarity to known genes in the non-redundant database of GenBank. The Eucalyptus unigene set generated is a valuable public resource that provides an initial model for genes and regulatory pathways involved in cell wall biosynthesis at low temperature.

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Título según WOS: Generation and analysis of an Eucalyptus globulus cDNA library constructed from seedlings subjected to low temperature conditions
Título según SCOPUS: Generation and analysis of an Eucalyptus globulus cDNA library constructed from seedlings subjected to low temperature conditions
Título según SCIELO: Generation and analysis of an Eucalyptus globulus cDNA library constructed from seedlings subjected to low temperature conditions
Título de la Revista: ELECTRONIC JOURNAL OF BIOTECHNOLOGY
Volumen: 11
Número: 2
Editorial: UNIV CATOLICA DE VALPARAISO
Fecha de publicación: 2008
Página de inicio: 56
Página final: 68
Idioma: en
URL: http://www.ejbiotechnology.info/content/vol11/issue2/full/14/index.html
Notas: ISI, SCIELO, SCOPUS