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Warren Johnson Crane

Research Scientist

Smithsonian Institution

Frederick, Estados Unidos

Conservation Genetics, Comparative Genomics, Molecular Ecology

Animal Ecology, IOWA STATE UNIVERSITY. Chile

Staff Scientist Full Time

National Cancer Institute, NIH

Frederick, Estados Unidos

1999 - 2012

The listed published papers are a representative sample over 160 published papers in refereed Journals.

Mentoring (Served as primary supervisor and mentor) (since 2000)

Post-Doctoral students
Dr. Begonia Martinez-Cruz, 2014 - 2016
Dr. Klaus Koepfli, 2009 - 2012
Dr. Polina Perelman, 2005 - 2011
Dr. Shujin Luo, 2006 - 2009
Dr. Agostinho Antunes, 2002 - 2004
Dr. Ronald Sarno, 1998 - 2001
Dr. JaeHeup Kim, 1998 - 2001

M.S. and Ph.D. students
Morgan Maly, 2017- TBD (PhD)
Audra Huffmeyer, 2014 - 2015 University of Michigan (M.S.)
Shujin Luo, 2004 - 2006 University of Minnesota (PhD)
Shujin Luo, 2001 - 2004 (M.S.)
Valerie Beason-Buckley, 2000 – 2004 (M.S.)

Visiting Graduate Students and Scientists
Andrea Koots, Ph.D., University of Maryland, 2010
Kimberly Terrell, Ph.D., Smithsonian Institutes, 2010
Muyeong Lee, Ph.D., South Korea, 2007 - 2010
Q.X. Cai, Ph.D., Beijing Normal University, China, 2007
Julianna Abreu, Ph.D., Universidad Andres Bello, Chile, 2007
David Onorato, Ph.D., Florida Fish and Wildlife Commission, 2006
Fan Yang, Ph.D., Beijing Normal University, China, 2006
Jose Godoy, Ph.D., Estación Biológica de Doñana, Spain, 2000
Begonia Martinez-Cruz, Ph.D., Estación Biológica de Doñana, Spain, 2000
Ana Pirez, M.S., Estación Biológica de Doñana, Spain, 2000

Research Associates
Nicole Crumpler, 2005 - 2011
Leslie Wachter, 2002 - 2005
John Page, 2000 - 2003

Student Intern Program (High School Students)
Jessica Tomlin, 2010-2011
Hannah Zinnert, 2010-2011
Amy Zheng, 2009 - 2010
Amy Chen, 2008 - 2009
Gary Chen, 2008 - 2009
Alex Benjamin, 2007 - 2008
Christie Walker, 2006 - 2007
Lindsey Kessler, 2006 - 2007
Aani Parish, 2005 - 2006
Mark Peters, 2005 - 2006
James Benjamin, 2004 - 2005
Savita Sathya, 2004 - 2005
Vladimir Tarasov, 2003 - 2004
Laura Eskander, 2002 - 2003
Jason Grove, 2000 - 2001
Erin Carney, 2000 - 2001
Amanda Garfinkle, 1999 - 2000
Carla Ferris, 1999 - 2000

Cancer Research Training Award students
Amy Chen, 2009
Christie Walker, 2007, 2008
Aani Parish, 2006
James Benjamin, 2005
Vladimir Tarasov, 2004
Laura Eskander, 2003
Chris Zalewski, 2002
Erin Carney, 2001
Amanda Garfinkle, 2000, 2001


Bone-associated gene evolution and the origin of flight in birds Machado, João Paulo; Johnson, Warren E.; Gilbert, M. Thomas P.; Zhang, Guojie; Jarvis, Erich D.; O’Brien, Stephen J.; Antunes, Agostinho Article BMC GENOMICS (2016)
Positive Selection Linked with Generation of Novel Mammalian Dentition Patterns Machado, João Paulo; Philip, Siby; Maldonado, Emanuel; O’Brien, Stephen J.; Johnson, Warren E.; Antunes, Agostinho Article GENOME BIOLOGY AND EVOLUTION (2016)
A Comprehensive Whole-Genome Integrated Cytogenetic Map for the Alpaca (Lama pacos) Avila, Felipe; Baily, Malorie P.; Perelman, Polina; Das, Pranab J.; Pontius, Joan; Chowdhary, Renuka; Owens, Elaine; Johnson, Warren E.; Merriwether, David A.; Raudsepp, Terje Article Cytogenetic and Genome Research (2015)
Genetic diversity of Rhizobium from nodulating beans grown in a variety of Mediterranean climate soils of Chile Baginsky, C; Brito B.; Scherson R.; Pertuze, R; Seguel, O.; Cañete Á.; Araneda, C; Johnson, WE Article ISI SCOPUS Archives of Microbiology (2015)
Genome-wide Evidence Reveals that African and Eurasian Golden Jackals Are Distinct Species Koepfli, Klaus-Peter; Pollinger, John; Godinho, Raquel; Robinson, Jacqueline; Lea, Amanda; Hendricks, Sarah; Schweizer, Rena M.; Thalmann, Olaf; Silva, Pedro; Fan, Zhenxin; Yurchenko, Andrey A.; Dobrynin, Pavel; Makunin, Alexey; Cahill, James A.; Shapiro, Beth; Álvares, Francisco; Brito, José C.; Geffen, Eli; Leonard, Jennifer A.; Helgen, Kristofer M.; Johnson, Warren E.; O’Brien, Stephen J.; Van Valkenburgh, Blaire; Wayne, Robert K. Article CURRENT BIOLOGY (2015)
Reduced Genetic Diversity and Increased Dispersal in Guigna (Leopardus guigna) in Chilean Fragmented Landscapes Napolitano, C; Diaz, D.; Sanderson J.; Johnson, WE; Ritland K.; Ritland, CE; Poulin E. Article ISI SCOPUS Journal of Heredity (2015)
Comparative genomics reveals insights into avian genome evolution and adaptation Zhang, G; Li, C.; Li, Q.; Li B.; Larkin D.M.; Lee C.; Storz J.F.; Antunes, A; Greenwold M.J.; Meredith R.W.; Odeen A.; Cui J.; Zhou, Q.; Xu, L; Pan H.; Wang Z.; Jin, L; Zhang, P.; Hu H.; Yang W.; Hu, J; Xiao, J; Yang, Z.; Liu Y.; Xie Q.; Yu H.; Lian J.; Wen P.; Zhang, F; Li H.; Zeng, Y; Xiong Z.; Liu S.; Zhou, L; Huang Z.; An N.; Wang J.; Zheng Q.; Xiong Y.; Wang, G; Wang, B; Fan, Y.; Da Fonseca R.R.; Alfaro-Nunez A.; Schubert, M; Orlando L.; Mourier T.; Howard J.T.; Ganapathy G.; Pfenning A.; Whitney O.; Rivas M.V.; Hara E.; Smith, J; Farre M.; Narayan J.; Slavov G.; Romanov M.N.; Borges R.; MacHado J.P.; Khan, I.; Springer M.S.; Gatesy J.; Hoffmann F.G.; Opazo, J.C.; Hastad O.; Sawyer R.H.; Kim, H; Kim K.-W.; Kim, H. J.; Cho, S; Li, N.; Huang, Y; Bruford, M. W.; Zhan, X; Dixon A.; Bertelsen M.F.; Derryberry E.; Warren W.; Wilson R.K.; Li S.; Ray D.A.; Green R.E.; O'Brien S.J.; Griffin D.; Johnson W.E.; Haussler D.; Ryder O.A.; Willerslev, E; Graves G.R.; Alstrom P.; Fjeldsa J.; Mindell D.P.; Edwards S.V.; Braun E.L.; Rahbek C.; Burt D.W.; Houde P.; Zhang, Y.; Yang H.; Jarvis E.D.; Gilbert M.T.P. Article ISI SCOPUS SCIENCE (2014)
Development and Application of Camelid Molecular Cytogenetic Tools Avila, Felipe; Das, Pranab J.; Kutzler, Michelle; Owens, Elaine; Perelman, Polina; Rubes, Jiri; Hornak, Miroslav; Johnson, Warren E.; Raudsepp, Terje Article JOURNAL OF HEREDITY (2014)
Evolutionary Genomics and Adaptive Evolution of the Hedgehog Gene Family (Shh, Ihh and Dhh) in Vertebrates Pereira, Joana; Johnson, Warren E.; O’Brien, Stephen J.; Jarvis, Erich D.; Zhang, Guojie; Gilbert, M. Thomas P.; Vasconcelos, Vitor; Antunes, Agostinho; Escriva, Hector Article PLOS ONE (2014)
Maintenance of Genetic Diversity in an Introduced Island Population of Guanacos after Seven Decades and Two Severe Demographic Bottlenecks: Implications for Camelid Conservation González B.Á.; Orozco-terWengel, P.; Von Borris, R.; Jonhson, W. E.; Franklin, W. L.; Marín J.C. Article ISI SCOPUS PLOS ONE (2014)
Mammalian keratin associated proteins (KRTAPs) subgenomes: disentangling hair diversity and adaptation to terrestrial and aquatic environments Khan, Imran; Maldonado, Emanuel; Vasconcelos, Vítor; O’Brien, Stephen J; Johnson, Warren E; Antunes, Agostinho Article BMC GENOMICS (2014)
Phylogeography and population history of Leopardus guigna, the smallest American felid Napolitano, C; Johnson W.E.; Sanderson J.; O'Brien S.J.; Rus Hoelzel A.; Freer R.; Dunstone N.; Ritland K.; Ritland C.E.; Poulin E. Article ISI SCOPUS CONSERVATION GENETICS (2014)
Sympatric Asian felid phylogeography reveals a major Indochinese-Sundaic divergence Luo, Shu-Jin; Zhang, Yue; Johnson, Warren E.; Miao, Lin; Martelli, Paolo; Antunes, Agostinho; Smith, James L. D.; O'Brien, Stephen J. Article MOLECULAR ECOLOGY (2014)
Whole-genome analyses resolve early branches in the tree of life of modern birds Jarvis, E. D.; Mirarab, S.; Aberer, A. J.; Li, B.; Houde, P.; Li, C.; Ho, S. Y. W.; Faircloth, B. C.; Nabholz, B.; Howard, J. T.; Suh, A.; Weber, C. C.; da Fonseca, R. R.; Li, J.; Zhang, F.; Li, H.; Zhou, L.; Narula, N.; Liu, L.; Ganapathy, G.; Boussau, B.; Bayzid, M. S.; Zavidovych, V.; Subramanian, S.; Gabaldon, T.; Capella-Gutierrez, S.; Huerta-Cepas, J.; Rekepalli, B.; Munch, K.; Schierup, M.; Lindow, B.; Warren, W. C.; Ray, D.; Green, R. E.; Bruford, M. W.; Zhan, X.; Dixon, A.; Li, S.; Li, N.; Huang, Y.; Derryberry, E. P.; Bertelsen, M. F.; Sheldon, F. H.; Brumfield, R. T.; Mello, C. V.; Lovell, P. V.; Wirthlin, M.; Schneider, M. P. C.; Prosdocimi, F.; Samaniego, J. A.; Velazquez, A. M. V.; Alfaro-Nunez, A.; Campos, P. F.; Petersen, B.; Sicheritz-Ponten, T.; Pas, A.; Bailey, T.; Scofield, P.; Bunce, M.; Lambert, D. M.; Zhou, Q.; Perelman, P.; Driskell, A. C.; Shapiro, B.; Xiong, Z.; Zeng, Y.; Liu, S.; Li, Z.; Liu, B.; Wu, K.; Xiao, J.; Yinqi, X.; Zheng, Q.; Zhang, Y.; Yang, H.; Wang, J.; Smeds, L.; Rheindt, F. E.; Braun, M.; Fjeldsa, J.; Orlando, L.; Barker, F. K.; Jonsson, K. A.; Johnson, W.; Koepfli, K.-P.; O'Brien, S.; Haussler, D.; Ryder, O. A.; Rahbek, C.; Willerslev, E.; Graves, G. R.; Glenn, T. C.; McCormack, J.; Burt, D.; Ellegren, H.; Alstrom, P.; Edwards, S. V.; Stamatakis, A.; Mindell, D. P.; Cracraft, J.; Braun, E. L.; Warnow, T.; Jun, W.; Gilbert, M. T. P.; Zhang, G. Article SCIENCE (2014)
The tiger genome and comparative analysis with lion and snow leopard genomes Cho, Yun Sung; Hu, Li; Hou, Haolong; Lee, Hang; Xu, Jiaohui; Kwon, Soowhan; Oh, Sukhun; Kim, Hak-Min; Jho, Sungwoong; Kim, Sangsoo; Shin, Young-Ah; Kim, Byung Chul; Kim, Hyunmin; Kim, Chang-uk; Luo, Shu-Jin; Johnson, Warren E.; Koepfli, Klaus-Peter; Schmidt-Küntzel, Anne; Turner, Jason A.; Marker, Laurie; Harper, Cindy; Miller, Susan M.; Jacobs, Wilhelm; Bertola, Laura D.; Kim, Tae Hyung; Lee, Sunghoon; Zhou, Qian; Jung, Hyun-Ju; Xu, Xiao; Gadhvi, Priyvrat; Xu, Pengwei; Xiong, Yingqi; Luo, Yadan; Pan, Shengkai; Gou, Caiyun; Chu, Xiuhui; Zhang, Jilin; Liu, Sanyang; He, Jing; Chen, Ying; Yang, Linfeng; Yang, Yulan; He, Jiaju; Liu, Sha; Wang, Junyi; Kim, Chul Hong; Kwak, Hwanjong; Kim, Jong-Soo; Hwang, Seungwoo; Ko, Junsu; Kim, Chang-Bae; Kim, Sangtae; Bayarlkhagva, Damdin; Paek, Woon Kee; Kim, Seong-Jin; O’Brien, Stephen J.; Wang, Jun; Bhak, Jong Article NATURE COMMUNICATIONS (2013)
Evolution of CRISPs Associated with Toxicoferan-Reptilian Venom and Mammalian Reproduction Sunagar, K.; Johnson, W. E.; O'Brien, S. J.; Vasconcelos, V.; Antunes, A. Article Molecular Biology and Evolution (2012)
Fish Lateral Line Innovation: Insights into the Evolutionary Genomic Dynamics of a Unique Mechanosensory Organ Philip, Siby; Machado, João Paulo; Maldonado, Emanuel; Vasconcelos, Vítor; O'Brien, Stephen J.; Johnson, Warren E.; Antunes, Agostinho Article MOLECULAR BIOLOGY AND EVOLUTION (2012)
Genetic Restoration of the Florida Panther Johnson, W. E.; Onorato, D. P.; Roelke, M. E.; Land, E. D.; Cunningham, M.; Belden, R. C.; McBride, R.; Jansen, D.; Lotz, M.; Shindle, D.; Howard, J.; Wildt, D. E.; Penfold, L. M.; Hostetler, J. A.; Oli, M. K.; O'Brien, S. J. Article SCIENCE (2010)
Pattern and timing of diversification of the mammalian order Carnivora inferred from multiple nuclear gene sequences Eizirik, Eduardo; Murphy, William J.; Koepfli, Klaus-Peter; Johnson, Warren E.; Dragoo, Jerry W.; Wayne, Robert K.; O’Brien, Stephen J. Article Molecular Phylogenetics and Evolution (2010)
Molecular genetic evidence for social group disruption of wild vicunas Vicugna vicugna captured for wool harvest in Chile Sarno, RJ; Gonzalez, BA; Bonacic, C.; Zapata B.; O’Brien SJ; Johnson, WE Article ISI SCOPUS SMALL RUMINANT RESEARCH (2009)
Ecological and biogeographical inferences on two sympatric and enigmatic Andean cat species using genetic identification of faecal samples Napolitano, C; Bennett, M; Johnson, WE; O’Brien SJ; Marquet, PA; Barria, I; Poulin E.; Iriarte, A Article ISI SCOPUS MOLECULAR ECOLOGY (2008)
Finding of polydactyly in a free-ranging guanaco (Lama guanicoe) Zapata B.; Gonzalez, BA; Marín JC; Cabello, JL; Johnson, WE; Skewes, O Article ISI SCOPUS SMALL RUMINANT RESEARCH (2008)
The Late Miocene Radiation of Modern Felidae: A Genetic Assessment Johnson, W. E. Article SCIENCE (2006)
BIG CAT GENOMICS O'Brien, Stephen J.; Johnson, Warren E. Article Annual Review of Genomics and Human Genetics (2005)
Detecting the vanishing populations of the highly endangered Darwin's fox, Pseudalopex fulvipes Ávila C.; Leonard, JA; Iriarte, A; O’Brien SJ; Johnson, WE; Wayne, RK Article ISI SCOPUS ANIMAL CONSERVATION (2004)
Phylogeography and Genetic Ancestry of Tigers (Panthera tigris) Luo, Shu-Jin; Kim, Jae-Heup; Johnson, Warren E; Walt, Joelle van der; Martenson, Janice; Yuhki, Naoya; Miquelle, Dale G; Uphyrkina, Olga; Goodrich, John M; Quigley, Howard B; Tilson, Ronald; Brady, Gerald; Martelli, Paolo; Subramaniam, Vellayan; McDougal, Charles; Hean, Sun; Huang, Shi-Qiang; Pan, Wenshi; Karanth, Ullas K; Sunquist, Melvin; Smith, James L. D; O'Brien, Stephen J; Craig Moritz Article PLOS BIOLOGY (2004)
Phylogeography and subspecies assessment of vicunas in Chile and Bolivia utilizing mtDNA and microsatellite markers: implications for vicuna conservation and management Sarno, RJ; Villalba, L; Bonacic, C.; Gonzalez, B.; Zapata B.; Mac Donald, DW; O’Brien SJ; Johnson, WE Article ISI SCOPUS CONSERVATION GENETICS (2004)
Disparate phylogeographic patterns of molecular genetic variation in four closely related South American small cat species Johnson, Warren E.; Slattery, Jill Pecon; Eizirik, Eduardo; Kim, Jae-Heup; Menotti Raymond, Marilyn; Bonacic, Cristian; Cambre, Richard; Crawshaw, Peter; Nunes, Adauto; Seuanez, Hector N.; Martins Moreira, Miguel Angelo; Seymour, Kevin L.; Simon, Faical; Swanson, William; O'Brien, Stephen J. Article Molecular Ecology (1999)


Population genetics of the felid Leopardus guigna in Southern South America: Identifying intraspecific units for conservation Napolitano, C; Sanderson J.; Johnson W.E.; O'Brien S.J.; Hoelzel A.R.; Freer R.; Dunstone N.; Ritland K.; Poulin E. BookWhole SCOPUS International Conference on Noise and Vibration Engineering 2012, ISMA 2012, including USD 2012: International Conference on Uncerta (2013)


The influence of the arid Andean high plateau on the phylogeography and population genetics of guanaco (Lama guanicoe) in South America Marín JC; Gonzalez, BA; Poulin E.; Casey, CS; Johnson, WE Review ISI SCOPUS Molecular Ecology (2013)