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Simon David Poblete Fuentes

Profesor Asistente

Universidad San Sebastián

Santiago, Chile

Dedicated to the computer simulation of soft matter and biological systems. Focused in the development of methodologies and models for the computational study of liquids, polymers, proteins and nucleic acids.

Physics, JOHANNES GUTENBERG UNIVERSITAT MAINZ. Alemania, 2011
Physics, UNIVERSIDAD DE CHILE. Chile, 2005
Physics, UNIVERSIDAD DE CHILE. Chile, 2007

Postdoc Full Time

INTERNATIONAL SCHOOL FOR ADVANCED STUDIES

Molecular and Statistical Biophysics

Trieste, Italia

2014 - 2018
Postdoc Full Time

FORSCHUNGSZENTRUM JULICH GMBH

Institute of Complex Systems

Juelich, Alemania

2011 - 2014
PhD student Full Time

MAX-PLANCK INSTITUT FUR POLYMERFORSCHUNG

Theory Group

Mainz, Alemania

2007 - 2011
Profesor Asistente Full Time

UNIVERSIDAD AUSTRAL DE CHILE

Ciencias

Valdivia, Chile

2019 - 2023

Beca Universidad de Chile

UNIVERSIDAD DE CHILE

Chile, 2001

Grant covering the expenses of the Bachelor studies.
Beca DAAD-Conicyt

DAAD

Chile, 2007

Grant covering the expenses of the PhD training.


A novel Bayesian reconstruction of the configurational density of states Moreno, Felipe; Davis, Sergio; Peralta, Joaquin; Poblete, Simon Article ISI COMPUTATIONAL MATERIALS SCIENCE (2023)
RNA Secondary Structures Regulate Adsorption of Fragments onto Flat Substrates Poblete, Simón; Boži?, Anže; Kanduc, Matej; Podgornik, Rudolf; V Guzman, Horacio Article ACS Omega (2021)
Structural 3D Domain Reconstruction of the RNA Genome from Viruses with Secondary Structure Models Poblete, Simón; V Guzman, Horacio Article VIRUSES-BASEL (2021)
Brief Comparison between Experimental and Computationally Generated Ensembles of RNA Dinucleotides Poblete S.; PÃ©rez-Acle T. Article ISI SCOPUS JOURNAL OF CHEMICAL INFORMATION AND MODELING (2020)
A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs Poblete, Simon; Bottaro, Sandro; Bussi, Giovanni Article ISI NUCLEIC ACIDS RESEARCH (2018)
Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered molecular dynamics Poblete, Simon; Bottaro, Sandro; Bussi, Giovanni Article ISI BIOCHEMICAL AND BIOPHYSICAL RESEARCH COMMUNICATIONS (2018)
RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview Sponer, Jiri; Bussi, Giovanni; Krepl, Miroslav; Banas, Pavel; Bottaro, Sandro; Cunha, Richard A.; Gil-Ley, Alejandro; Pinamonti, Giovanni; Poblete, Simon; Jureacka, Petr; Walter, Nils G.; Otyepka, Michal Article ISI CHEMICAL REVIEWS (2018)
Single-Molecule FRET Measurements in Additive-Enriched Aqueous Solutions Kempe, Daryan; Cerminara, Michele; Poblete, Simón; Schöne, Antonie; Gabba, Matteo; Fitter, Jörg Article Analytical Chemistry (2017)
Static and dynamic light scattering by red blood cells: A numerical study Mauer, Johannes; Peltomäki, Matti; Poblete, Simón; Gompper, Gerhard; Fedosov, Dmitry A.; Atzberger, Paul J Article PLOS ONE (2017)
Conformational State Distributions and Catalytically Relevant Dynamics of a Hinge-Bending Enzyme Studied by Single-Molecule FRET and a Coarse-Grained Simulation Gabba, Matteo; Poblete, Simón; Rosenkranz, Tobias; Katranidis, Alexandros; Kempe, Daryan; Züchner, Tina; Winkler, Roland G.; Gompper, Gerhard; Fitter, Jörg Article BIOPHYSICAL JOURNAL (2014)
Hydrodynamics of discrete-particle models of spherical colloids: A multiparticle collision dynamics simulation study Poblete, Simón; Wysocki, Adam; Gompper, Gerhard; Winkler, Roland G. Article PHYSICAL REVIEW E (2014)
Inter-Dye Distance Distributions Studied by a Combination of Single-Molecule FRET-Filtered Lifetime Measurements and a Weighted Accessible Volume (wAV) Algorithm Höfig, Henning; Gabba, Matteo; Poblete, Simón; Kempe, Daryan; Fitter, Jörg Article MOLECULES (2014)
Structure and Dynamics of a Compact State of a Multidomain Protein, the Mercuric Ion Reductase Hong, Liang; Sharp, Melissa A.; Poblete, Simón; Biehl, Ralf; Zamponi, Michaela; Szekely, Noemi; Appavou, Marie-Sousai; Winkler, Roland G.; Nauss, Rachel E.; Johs, Alexander; Parks, Jerry M.; Yi, Zheng; Cheng, Xiaolin; Liang, Liyuan; Ohl, Michael; Miller, Susan M.; Richter, Dieter; Gompper, Gerhard; Smith, Jeremy C. Article BIOPHYSICAL JOURNAL (2014)
Adaptive resolution molecular dynamics simulation through coupling to an internal particle reservoir Fritsch, S.; Poblete, S.; Junghans, C.; Ciccotti, G.; Delle Site, L.; Kremer, K. Article PHYSICAL REVIEW LETTERS (2012)
Characterization of the melting transition in two dimensions at vanishing external pressure using molecular dynamics simulations Asenjo D.; Lund F.; Poblete S.; Soto R.; Sotomayor, M Article ISI SCOPUS Physical Review B - Condensed Matter and Materials Physics (2011)
Comment on “Adaptive Multiscale Molecular Dynamics of Macromolecular Fluids” Praprotnik, M.; Poblete, S.; Delle Site, L.; Kremer, K. Article PHYSICAL REVIEW LETTERS (2011)
Statistical Physics Problems in Adaptive Resolution Computer Simulations of Complex Fluids Praprotnik, Matej; Poblete, Simon; Kremer, Kurt Article Journal of Statistical Physics (2011)
A reference implementation of the adaptive resolution scheme in ESPResSo Junghans, Christoph; Poblete, Simón Article COMPUTER PHYSICS COMMUNICATIONS (2010)
Coupling different levels of resolution in molecular simulations Poblete, Simón; Praprotnik, Matej; Kremer, Kurt; Delle Site, Luigi Article The Journal of Chemical Physics (2010)

Simon Poblete

Profesor Asistente

Facultad de Ingeniería, Arquitectura y Diseño

Universidad San Sebastián

Santiago, Chile

Tomas Perez-Acle

Full Professor

Computational Biology Lab

Fundación Ciencia para la Vida

Santiago, Chile

Rodrigo Soto

Full professor

Physics

DEPARTAMENTO DE FISICA, FCFM, UNIVERSIDAD DE CHILE

Santiago, Chile

Fernando Lund

Profesor Titular

Physics

UNIVERSIDAD DE CHILE

Santiago, Chile

Simon David Poblete Fuentes

Líneas de Investigación

Educación

Physics, JOHANNES GUTENBERG UNIVERSITAT MAINZ. Alemania, 2011

Physics, UNIVERSIDAD DE CHILE. Chile, 2005

Physics, UNIVERSIDAD DE CHILE. Chile, 2007

Experiencia Académica

Postdoc Full Time

Postdoc Full Time

PhD student Full Time

Profesor Asistente Full Time

Premios y Distinciones

Beca Universidad de Chile

Beca DAAD-Conicyt

Article (19)

A novel Bayesian reconstruction of the configurational density of states

RNA Secondary Structures Regulate Adsorption of Fragments onto Flat Substrates

Structural 3D Domain Reconstruction of the RNA Genome from Viruses with Secondary Structure Models

Brief Comparison between Experimental and Computationally Generated Ensembles of RNA Dinucleotides

A nucleobase-centered coarse-grained representation for structure prediction of RNA motifs

Effects and limitations of a nucleobase-driven backmapping procedure for nucleic acids using steered molecular dynamics

RNA Structural Dynamics As Captured by Molecular Simulations: A Comprehensive Overview

Single-Molecule FRET Measurements in Additive-Enriched Aqueous Solutions

Static and dynamic light scattering by red blood cells: A numerical study

Conformational State Distributions and Catalytically Relevant Dynamics of a Hinge-Bending Enzyme Studied by Single-Molecule FRET and a Coarse-Grained Simulation

Hydrodynamics of discrete-particle models of spherical colloids: A multiparticle collision dynamics simulation study

Inter-Dye Distance Distributions Studied by a Combination of Single-Molecule FRET-Filtered Lifetime Measurements and a Weighted Accessible Volume (wAV) Algorithm

Structure and Dynamics of a Compact State of a Multidomain Protein, the Mercuric Ion Reductase

Adaptive resolution molecular dynamics simulation through coupling to an internal particle reservoir

Characterization of the melting transition in two dimensions at vanishing external pressure using molecular dynamics simulations

Comment on “Adaptive Multiscale Molecular Dynamics of Macromolecular Fluids”

Statistical Physics Problems in Adaptive Resolution Computer Simulations of Complex Fluids

A reference implementation of the adaptive resolution scheme in ESPResSo

Coupling different levels of resolution in molecular simulations

Simon Poblete

Tomas Perez-Acle

Rodrigo Soto

Fernando Lund