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timothy james rudge

assistant professor

universidad catolica de chile

santiago, Chile

synthetic biology; computational biology; bioengineering; Mechanobiology

doctor of philosophy, UNIVERSITY OF CAMBRIDGE. Reino Unido, 2015
computer vision, image processing, graphics and simulation, UNIVERSITY COLLEGE LONDON. Reino Unido, 2002
mechatronics, UNIVERSITY OF LEEDS. Reino Unido, 1998

assistant professor Full Time

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Instituto de Ingenieria Biologica y Medica

santiago, Chile

2016 - At present

post-doc Full Time

university of cambridge

Reino Unido

2014 - 2016
research associate Full Time

university college london

Reino Unido

2009 - 2010
research associate Full Time

university of queensland

Australia

2004 - 2006
research assistant Full Time

university of cambridge

Reino Unido

2002 - 2004
Investigador asociado Part Time

Fondecyt Regular (Mario Vera)

Chile

2019 - At present
Investigador associado Part Time

Fondecyt Regular (Veronica Eisner)

Chile

2019 - At present
profesor asistente Full Time

universidad catolica de chile

santiago, Chile

2016 - At present
investigador responsable Full Time

fondecyt de iniciación

Chile

2016 - 2019

Alumnnos graduados:

Isaac Nuñez, Magister, graduado 2017
Tamara Matute, Magister, graduado 2017
Macarena Muñoz, Magister, graduado 2019
Ignacio Medina, Practica en fisica, graduado 2019
Sebastian Urrejola, Investigacion en pregrado, terminado 2019
Sebastian Urrejola, Practica en física, terminado 2019
Ignacio Medina, Investigacion en pregrado, terminado 2019
Ignacio Medina, Practica en física, terminado 2019
Ambrosio Valdes, Investigacion en pregrado, terminado 2017
Carlos Ruiz, Investigacion en pregrado, terminado 2017
Gabriela Retamales, Investigacion en pregrado, terminado 2017
Sofia Figueroa, Investigacion en pregrado, ingreso 2019
Daniela Barrera, Investigacion en pregrado, ingreso 2019

Alumnos supervisados actualmente:

Isaac Nuñez, Doctorado, ingreso 2018
Tamara Matute, Doctorado, ingreso 2018
Gonzalo Vidal, Doctorado, ingreso 2019
Guillermo Yañez, Doctorado, ingreso 2019
Geraldine Aedo, Doctorado, ingreso 2019
Emily Skog, Investigacion en pregrado, ingreso 2020
Verner Codoceo, Investigacion en pregrado, ingreso 2019
Benjamin Earleman, Investigacion en pregrado, ingreso 2019

Workshop Synthetic Biology, Universidad Austral, Valdivia, 2017
Workshop Synthetic Biology, Universidad Austral, Valdivia, 2018
Book chapter, https://doi.org/10.1201/9780429461385

Public Library of Science Best Open Hardware Project

Public Library of Science (PLoS)

Estados Unidos, 2017

Annual prize for the best project developing open source hardware designs, for our work making a low cost fluorescence imaging system.


An equilibrium model for ribosome competition Rogalla P.S.; Rudge T.J.; Ciandrini L. Article ISI SCOPUS PHYSICAL BIOLOGY (2020)
Cohesive energy and interaction of superparamagnetic aggregates Rojas, N.; Cerda, M.; Ravasio, A.; Rudge, T. Article ISI AIP ADVANCES (2020)
Flapjack: Data Management and Analysis for Genetic Circuit Characterization Yañez Feliú, Guillermo; Earle Gómez, Benjamín; Codoceo Berrocal, Verner; Muñoz Silva, Macarena; Nuñez, Isaac; Matute, Tamara; Arce Medina, Anibal; Vidal, Gonzalo; Vidal Céspedes, Carlos; Dahlin, Jonathan; Federici, Fernán; Rudge,Timothy J. Article ACS SYNTHETIC BIOLOGY (2020)
Novel tunable spatio-temporal patterns from a simple genetic oscillator circuit Yañez Feliu, Guillermo and Vidal Pena, Gonzalo and Muñoz Silva, Macarena and Rudge, Timothy James Article FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2020)
Intercellular adhesion promotes clonal mixing in growing bacterial populations Kan, A; Del Valle, I; Rudge, T.; Federici, F; Haseloff, J Article ISI SCOPUS JOURNAL OF THE ROYAL SOCIETY INTERFACE (2018)
Intercellular adhesion promotes clonal mixing in growing bacterial populations Kan, Anton; Del Valle, Ilenne; Rudge, Tim; Federici, Fernán; Haseloff, Jim Article Journal of the Royal Society (2018)
Artificial Symmetry-Breaking for Morphogenetic Engineering Bacterial Colonies Nuñez I.N.; Matute T.F.; Del Valle I.D.; Kan A.; Choksi A.; Endy D.; Haseloff J.; Rudge T.J.; Federici F. Article ISI SCOPUS ACS SYNTHETIC BIOLOGY (2017)
Artificial Symmetry-Breaking for Morphogenetic Engineering Bacterial Colonies. Nuñez, Isaac N; Matute, Tamara F; Del Valle, Ilenne D; Kan, Anton; Choksi, Atri; Endy, Drew; Haseloff, Jim; Rudge, Timothy J; Federici, Fernan Article ACS synthetic biology (2017)
Low cost and open source multi-fluorescence imaging system for teaching and research in biology and bioengineering Nunez, I; Matute, T; Herrera, R; Keymer, J; Marzullo, T; Rudge, T; Federici, F Article ISI SCOPUS PLOS ONE (2017)
Low cost and open source multi-fluorescence imaging system for teaching and research in biology and bioengineering Nunez, I; Matute, T; Herrera, R; Keymer, J; Marzullo, T; Rudge, T; Federici, F Article PLOS ONE (2017)
Characterization of Intrinsic Properties of Promoters Rudge, TJ; Brown, JR; Federici, F; Dalchau N.; Phillips, A; Ajioka, JW; Haseloff, J Article ISI SCOPUS ACS SYNTHETIC BIOLOGY (2016)
Characterization of Intrinsic Properties of Promoters Rudge, TJ; Brown, JR; Federici, F; Dalchau, N; Phillips, A; Ajioka, JW; Haseloff, J Article ACS SYNTHETIC BIOLOGY (2016)
Characterization of Intrinsic Properties of Promoters Rudge, TJ; Brown, JR; Federici F., Dalchau N.; Phillips A., Ajioka; JW, Haseloff J. Article ACS Synthetic Biology (2016)
Characterization of Intrinsic Properties of Promoters. Rudge, Timothy J; Brown, James R; Federici, Fernan; Dalchau, Neil; Phillips, Andrew; Ajioka, James W; Haseloff, Jim Article ACS synthetic biology (2016)
Orthogonal intercellular signaling for programmed spatial behavior Grant P.K.; Dalchau N.; Brown J.R.; Federici, F; Rudge T.J.; Yordanov B.; Patange O.; Phillips, A; Haseloff, J Article ISI SCOPUS MOLECULAR SYSTEMS BIOLOGY (2016)
Orthogonal intercellular signaling for programmed spatial behavior Grant, PK; Dalchau, N; Brown, JR; Federici, F; Rudge, TJ; Yordanov, B; Patange, O; Phillips, A; Haseloff, J Article MOLECULAR SYSTEMS BIOLOGY (2016)
Orthogonal intercellular signaling for programmed spatial behavior. Grant, Paul K; Dalchau, Neil; Brown, James R; Federici, Fernan; Rudge, Timothy J; Yordanov, Boyan; Patange, Om; Phillips, Andrew; Haseloff, Jim Article Molecular systems biology (2016)
Cell Polarity-Driven Instability Generates Self-Organized, Fractal Patterning of Cell Layers Rudge, Timothy J.; Federici, Fernan; Steiner, Paul J.; Kan, Anton; Haseloff, Jim Article ISI ACS SYNTHETIC BIOLOGY (2013)
Cell Polarity-Driven Instability Generates Self-Organized, Fractal Patterning of Cell Layers Rudge, Timothy J.; Federici, Fernan; Steiner, Paul J.; Kan, Anton; Haseloff, Jim Article ACS SYNTHETIC BIOLOGY (2013)
Synthetic Biology: opportunities for Chilean bioindustry and education Federici, Fernan; Rudge,Timothy J.; Pollak, Bernardo.; Haseloff, Jim; Gutiérrez, Rodrigo A. Article ISI SCIELO SCOPUS Biological Research (2013)
Synthetic Biology: opportunities for Chilean bioindustry and education Federici, Fernan; Rudge, Timothy J.; Pollak, Bernardo; Haseloff, Jim; Gutiérrez, Rodrigo A. Article Biological Research : (2013)
Wavelet-based data and solution compression for efficient image reconstruction in fluorescence diffuse optical tomography Correia T.; Rudge, T.; Koch M.; Ntziachristos, V; Arridge, S Article ISI JOURNAL OF BIOMEDICAL OPTICS (2013)
Wavelet-based data and solution compression for efficient image reconstruction in fluorescence diffuse optical tomography Correia, T; Rudge, T; Koch, M; Ntziachristos, V; Arridge, S Article JOURNAL OF BIOMEDICAL OPTICS (2013)
Computational Modeling of Synthetic Microbial Biofilms Rudge, TJ; Steiner, PJ; Phillips, A; Haseloff, J Article ACS SYNTHETIC BIOLOGY (2012)
Computational Modeling of Synthetic Microbial Biofilms Rudge, TJ; Steiner, PJ; Phillips, A; Haseloff, J Article ISI ACS SYNTHETIC BIOLOGY (2012)
Fast image reconstruction in fluoresence optical tomography using data compression Rudge, TJ; Soloviev, VY; Arridge, SR Article OPTICS LETTERS (2010)
Fast image reconstruction in fluoresence optical tomography using data compression Rudge,Timothy J.; Soloviev, Vadim Y.; Arridge, Simon R. Article ISI OPTICS LETTERS (2010)
Full-wavelet approach for fluorescence diffuse optical tomography with structured illumination Ducros, N; Dâ€™Andrea C.; Valentini, G; Rudge, T.; Arridge, S; Bassi A. Article ISI OPTICS LETTERS (2010)
A system for modelling cell-cell interactions during plant morphogenesis Dupuy, Lionel; Mackenzie, Jonathan; Rudge, Tim; Haseloff, Jim Article ISI ANNALS OF BOTANY (2008)
A system for modelling cell-cell interactions during plant morphogenesis. Dupuy, Lionel; Mackenzie, Jonathan; Rudge, Tim; Haseloff, Jim Article Annals of botany (2008)
Effects of intrinsic and extrinsic noise can accelerate juxtacrine pattern formation Rudge, Tim; Burrage, Kevin Article ISI BULLETIN OF MATHEMATICAL BIOLOGY (2008)
Effects of intrinsic and extrinsic noise can accelerate juxtacrine pattern formation. Rudge, Tim; Burrage, Kevin Article Bulletin of mathematical biology (2008)


Scanning Angle Interference Microscopy (SAIM) Bertocchi, Cristina; Ravasio, Andrea; Rudge,Timothy J.; Jiang, Qiu-Xing BookSection (2020)


Efficient image reconstruction in fluorescence diffuse opitcal tomography (fDOT) using data and solution compression Correia T.; Rudge, T.; Arridge, S ConferencePaper ISI COMPUTATIONAL OPTICS 2024 (2013)


Mechanical constraints induce traveling waves of gene expression in cell colonies Rudge, Timothy J.; Federici, Fernan; Ravasio, Andrea Proyecto (2021)
Multiscale dynamics and active matter processes regulate tensional homeostasis of cellu-lar aggregates Ravasio, Andrea; Rudge, Timothy J. Proyecto (2021)
Spatial Biology of Synthetic Genetic Networks Federici, Fernán; Rudge, Timothy J. Proyecto (2021)
Multiscale mechanics and self-organizing processes in developing systems Ravasio, Andrea; Rudge,Timothy J.; Cerda, Mauricio David; Concha, Miguel.; Bertocchi, Cristina Proyecto (2019)
Role of mitochondrial inner membrane and mtDNA dynamics on mitochondrial bioenergetics in health and disease FONDECYT (1191770) Proyecto 2019-2023 Coinvestigador(a)
Through a rational design of bioleaching consortia=> Plattform for biofilm-metal sulfide surface interactions, and high troughput selective imaging of mixed species biofilms FONDECYT (1190892) Proyecto 2019-2023 Coinvestigador(a)
SPATIO-TEMPORAL DYNAMICS OF DRIVEN SYNTHETIC GENE NETWORKS IN BACTERIAL POPULATIONS FONDECYT (11161046) Proyecto 2016-2019 Inv. Responsable

timothy rudge

assistant professor

Instituto de ingenieria biologica y medica

universidad catolica de chile

santiago, Chile

Fernan Federici

Assistant Professor

Genetica Molecular y Microbiologia

Pontificia Universidad Catolica de Chile

Santiago, Chile

Bernardo Pollak

Fundador y CEO

Multiplex SpA

Santiago, Chile

Andrea Ravasio

Assistant Professor

Instituto de Ingeniería Biológica y Médica

Pontificia Universidad Católica de Chile

Santiago, Chile

Nicolás Rojas

Research Associate

Schools of Engineering, Biology and Medicine

Pontificia Universidad Católica de Chile

Santiago, Chile

timothy james rudge

Líneas de Investigación

Educación

doctor of philosophy, UNIVERSITY OF CAMBRIDGE. Reino Unido, 2015

computer vision, image processing, graphics and simulation, UNIVERSITY COLLEGE LONDON. Reino Unido, 2002

mechatronics, UNIVERSITY OF LEEDS. Reino Unido, 1998

Experiencia Académica

assistant professor Full Time

Experiencia Profesional

post-doc Full Time

research associate Full Time

research associate Full Time

research assistant Full Time

Investigador asociado Part Time

Investigador associado Part Time

profesor asistente Full Time

investigador responsable Full Time

Formación de Capital Humano

Difusión y Transferencia

Premios y Distinciones

Public Library of Science Best Open Hardware Project

Article (32)

BookSection (1)

ConferencePaper (1)

Proyecto (7)

Role of mitochondrial inner membrane and mtDNA dynamics on mitochondrial bioenergetics in health and disease

Through a rational design of bioleaching consortia=> Plattform for biofilm-metal sulfide surface interactions, and high troughput selective imaging of mixed species biofilms

SPATIO-TEMPORAL DYNAMICS OF DRIVEN SYNTHETIC GENE NETWORKS IN BACTERIAL POPULATIONS