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Danilo Rodrigo Pérez Pantoja

Investigador

UNIVERSIDAD TECNOLÓGICA METROPOLITANA

Santiago, Chile

-Genómica Microbiana -Biodegradación -Metagenómica -Ingeniería Metabólica

Molecular Genetics and Microbiology, PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE. Chile, 2009
Biochemistry, UNIVERSIDAD DE CHILE. Chile, 1998
Bioinformatics and Computational Biology, UNIVERSIDAD COMPLUTENSE DE MADRID. España, 2012
Biochemist, UNIVERSIDAD DE CHILE. Chile, 2002

Profesor Asistente Full Time

UNIVERSIDAD DE CONCEPCION

Ciencias Biológicas

Concepción, Chile

2015 - 2017
Investigador Full Time

UNIVERSIDAD TECNOLOGICA METROPOLITANA

Santiago, Chile

2017 - At present
Investigador Postdoctoral Full Time

Centro Nacional de Biotecnología - CSIC

Madrid, España

2011 - 2015

Premio Medalla de Honor Hermann Niemeyer

SOCIEDAD DE BIOQUIMICA DE CHILE

Chile, 2004

Premio al mejor estudiante de los programas de Doctorado en Bioquímica y Biología Molecular


Methylotrophs and Hydrocarbon-Degrading Bacteria Are Key Players in the Microbial Community of an Abandoned Century-Old Oil Exploration Well Rojas-Gatjens, Diego; Fuentes-Schweizer, Paola; Rojas-Jimenez, Keilor; Perez-Pantoja, Danilo; Avendano, Roberto; Alpizar, Randall; Coronado-Ruiz, Carolina; Chavarria, Max Article ISI MICROBIAL ECOLOGY (2021)
The faulty SOS response of Pseudomonas putida KT2440 stems from an inefficient RecA-LexA interplay Akkaya, Ozlem; Aparicio, Tomas; Perez-Pantoja, Danilo; de Lorenzo, Victor Article ISI ENVIRONMENTAL MICROBIOLOGY (2021)
Transcriptional control of 2,4-dinitrotoluene degradation in Burkholderia sp. R34 bears a regulatory patch that eases pathway evolution Perez-Pantoja, Danilo; Nikel, Pablo I.; Chavarria, Max; de Lorenzo, Victor Article ISI ENVIRONMENTAL MICROBIOLOGY (2021)
Complete Genome Sequence of Rhodococcus ruber R1, a Novel Strain Showing a Broad Catabolic Potential toward Lignin-Derived Aromatics Farkas, Carlos; Donoso, Raul A.; Melis-Arcos, Felipe; Garate-Castro, Carla; Perez-Pantoja, Danilo Article WOS-ESCI SCOPUS Microbiology Resource Announcements (2020)
Draft Genome Sequences of Two Pseudomonas Strains That Are Able To Use Furan Derivatives as Their Sole Carbon Source Farkas, Carlos; Donoso, Raul A.; Garate-Castro, Carla; Villegas, Pamela; Duran, Roberto E.; Seeger, Michael; Perez-Pantoja, Danilo Article WOS-ESCI SCOPUS Microbiology Resource Announcements (2020)
Novel Genes Involved in Resistance to Both Ultraviolet Radiation and Perchlorate From the Metagenomes of Hypersaline Environments Lamprecht-Grandio, Maria; Cortesao, Marta; Mirete, Salvador; de la Camara, Macarena Benguigui; de Figueras, Carolina G.; Perez-Pantoja, Danilo; White, Joseph John; Farias, Maria Eugenia; Rossello-Mora, Ramon; Gonzalez-Pastor, Jose Eduardo Article ISI FRONTIERS IN MICROBIOLOGY (2020)
Evolving metabolism of 2,4-dinitrotoluene triggers SOS-independent diversification of host cells Akkaya, O; Nikel, PI; Perez-Pantoja, D; de Lorenzo, V Article ISI SCOPUS ENVIRONMENTAL MICROBIOLOGY (2019)
Diurnal Changes in Active Carbon and Nitrogen Pathways Along the Temperature Gradient in Porcelana Hot Spring Microbial Mat Alcaman-Arias, ME; Pedros-Alio, C; Tamames, J; Fernandez, C; Perez-Pantoja, D; Vasquez, M; Diez, B Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2018)
Draft genome sequences of Cylindrospermopsis raciborskii strains CS-508 and MVCC14, isolated from freshwater bloom events in Australia and Uruguay Fuentes-Valdés, Juan J.; Soto-Liebe, Katia; Pérez-Pantoja, Danilo; Tamames, Javier; Belmar, Lucy; Pedrós-Alió, Carlos; Garrido, Daniel.; Vásquez, Mónica Article ISI SCOPUS Standards in Genomic Sciences (2018)
The interplay of EIIANtr with C-source regulation of the Pu promoter of Pseudomonas putida mt-2 PÃ©rez-Pantoja D.; Kim J.; Platero R.; de Lorenzo V. Article ISI SCOPUS Environmental Microbiology (2018)
The Metabolic Redox Regime of Pseudomonas putida Tunes Its Evolvability toward Novel Xenobiotic Substrates Akkaya, O; Perez-Pantoja, DR; Calles, B; Nikel, PI; de Lorenzo V. Article ISI SCOPUS MBIO (2018)
Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid Svenningsen, NB; Damgaard, M; Rasmussen, M; Perez-Pantoja, D; Nybroe, O; Nicolaisen, MH Article ISI SCOPUS BMC Microbiology (2017)
Genomic features of "Candidatus Venteria ishoeyi", a new sulfur-oxidizing macrobacterium from the Humboldt Sulfuretum off Chile Fonseca, A; Ishoey, T; Espinoza, C; Perez-Pantoja, D; Manghisi, A; Morabito, M; Salas-Burgos, A; Gallardo, VA Article ISI SCOPUS PLOS ONE (2017)
Plasmid and clonal interference during post horizontal gene transfer evolution Bedhomme, S; Pérez-Pantoja, D; Bravo, IG Article ISI SCOPUS MOLECULAR ECOLOGY (2017)
DNA damage elicits a different SOS response in Pseudomonas putida and Escherichia coli Akkaya, Ozlem; Ivan Nikel, Pablo; Perez-Pantoja, Danilo; de Lorenzo, Victor Article ISI NEW BIOTECHNOLOGY (2016)
High-resolution analysis of the m-xylene/toluene biodegradation subtranscriptome of Pseudomonas putida mt-2 Kim, Juhyun; Pérez-Pantoja, Danilo; Silva-Rocha, Rafael; Oliveros, Juan Carlos; de Lorenzo, Víctor Article ISI SCOPUS ENVIRONMENTAL MICROBIOLOGY (2016)
Pyridine nucleotide transhydrogenases enable redox balance of Pseudomonas putida during biodegradation of aromatic compounds Nikel, PI; Pérez-Pantoja, D; de Lorenzo, V Article ISI SCOPUS ENVIRONMENTAL MICROBIOLOGY (2016)
Hierarchy of Carbon Source Utilization in Soil Bacteria: Hegemonic Preference for Benzoate in Complex Aromatic Compound Mixtures Degraded by Cupriavidus pinatubonensis Strain JMP134 Pérez-Pantoja, Danilo; Leiva-Novoa, Pablo; Donoso, Raúl A.; Little, Cedric; Godoy, Margarita; Pieper, Dietmar H.; González, Bernardo; Parales, R. E. Article ISI SCOPUS Applied and Environmental Microbiology (2015)
Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response Svenningsen, Nanna B.; Perez-Pantoja, Danilo; Nikel, Pablo I.; Nicolaisen, Mette H.; de Lorenzo, Victor; Nybroe, Ole Article ISI BMC MICROBIOLOGY (2015)
The differential response of the Pben promoter of Pseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts in m-xylene biodegradation Perez-Pantoja, D; Kim, J; Silva-Rocha, R; de Lorenzo V. Article ISI ENVIRONMENTAL MICROBIOLOGY (2015)
A second chromosomal copy of the catA gene endows Pseudomonas putidamt-2 with an enzymatic safety valve for excess of catechol Jimenez, JI; Perez-Pantoja, D; Chavarria, M; Diaz, E.; Lorenzo, V Article ISI ENVIRONMENTAL MICROBIOLOGY (2014)
Endogenous Stress Caused by Faulty Oxidation Reactions Fosters Evolution of 2,4-Dinitrotoluene-Degrading Bacteria Perez-Pantoja, D; Nikel, PI; Chavarria, M; de Lorenzo V. Article ISI PLOS GENETICS (2013)
The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress Chavarria, M; Nikel, PI; Perez-Pantoja, D; Lorenzo, V Article ISI ENVIRONMENTAL MICROBIOLOGY (2013)
Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloprop-1-ene metabolism by Pseudomonas pavonaceae Nikel, Pablo I.; Perez-Pantoja, Danilo; de Lorenzo, Victor Article ISI PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES (2013)
Aromatic compounds degradation plays a role in colonization of Arabidopsis thaliana and Acacia caven by Cupriavidus pinatubonensis JMP134 Ledger, T.; Zuniga, A; Kraiser, T.; Dasencich P.; Donoso R.; Perez-Pantoja, D; Gonzalez, B. Article ISI SCOPUS ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY (2012)
Strict and direct transcriptional repression of the pobA gene by benzoate avoids 4-hydroxybenzoate degradation in the pollutant degrader bacterium Cupriavidus necator JMP134 Donoso RA; Perez-Pantoja, D; Gonzalez, B. Article ISI SCOPUS ENVIRONMENTAL MICROBIOLOGY (2011)
Modified 3-Oxoadipate Pathway for the Biodegradation of Methylaromatics in Pseudomonas reinekei MT1 Marin M.; Perez-Pantoja, D; Donoso R.; Wray V.; Gonzalez, B.; Pieper DH Article ISI SCOPUS JOURNAL OF BACTERIOLOGY (2010)
The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader Lykidis, A; Perez-Pantoja, D; Ledger, T.; Mavromatis, K; Anderson, IJ; Ivanova, NN; Hooper, SD; Lapidus, A.; Lucas, S.; Gonzalez, B.; Kyrpides, NC Article ISI SCOPUS PLOS ONE (2010)
Genuine genetic redundancy in maleylacetate-reductase-encoding genes involved in degradation of haloaromatic compounds by Cupriavidus necator JMP134 Perez-Pantoja, D; Donoso RA; Sánchez MA; Gonzalez, B. Article ISI SCOPUS MICROBIOLOGY-SGM (2009)
Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways Trefault, N; De la Iglesia, R; Molina, AM; Manzano, M; Ledger, T.; Perez-Pantoja, D; Sánchez MA; Stuardo, M.; Gonzalez, B. Article ISI ENVIRONMENTAL MICROBIOLOGY (2004)
Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid Perez-Pantoja, D; Ledger, T.; Pieper DH; Gonzalez, B. Article ISI SCOPUS JOURNAL OF BACTERIOLOGY (2003)
Importance of different tfd genes for degradation of chloroaromatics by Ralstonia eutropha JMP134 Plumeier, I; Perez-Pantoja, D; Heim S.; Gonzalez, B.; Pieper DH Article ISI JOURNAL OF BACTERIOLOGY (2002)
Novel insights into the interplay between peripheral reactions encoded by xyl genes and the chlorocatechol pathway encoded by tfd genes for the degradation of chlorobenzoates by Ralstonia eutropha JMP134 Ledger, T.; Pieper DH; Perez-Pantoja, D; Gonzalez, B. Article ISI MICROBIOLOGY-SGM (2002)
Role of tfdC(I)D(I)E(I)F(I) and tfdD(II)C(II)E(II)F(II) gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4) Perez-Pantoja, D; Guzman, L; Manzano, M; Pieper DH; Gonzalez, B. Article ISI SCOPUS APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2000)


Genome sequencing and characterization of novel proteobacterial strains having the ability to use furan aldehydes as only carbon source Donoso, R; Gonzlez-Toro, F; Guajardo-Parra, M; Araya-Nail, M; Farkas, C; Maldonado-Agurto, R; Morgante V.; Prez-Pantoja, D Abstract ISI NEW BIOTECHNOLOGY (2018)


Prokaryotic Metatranscriptomics Pérez-Pantoja, Danilo; Tamames, Javier; McGenity, Terry J; Timmis, Kenneth N; Nogales, Balbina BookSection DOI: 10.1007/8623_2015_146 (2015)
Aerobic Degradation of Aromatic Hydrocarbons Pérez-Pantoja, Danilo; González, Bernardo; Pieper, Dietmar H; Timmis, Kenneth N BookSection DOI: 10.1007/978-3-540-77587-4_60 (2010)
Aerobic Degradation of Chloroaromatics Pieper, Dietmar H; González, Bernardo; Cámara, Beatriz; Pérez-Pantoja, Danilo; Reineke, Walter; Timmis, Kenneth N BookSection DOI: 10.1007/978-3-540-77587-4_61 (2010)
Phylogenomics of Aerobic Bacterial Degradation of Aromatics Pérez-Pantoja, Danilo; González, Bernardo; Pieper, Dietmar H; Timmis, Kenneth N BookSection DOI: 10.1007/978-3-540-77587-4_95 (2010)


Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2 Silva-Rocha, R; Perez-Pantoja, D; de Lorenzo V. EditorialMaterial ISI ISME JOURNAL (2013)


Towards more robust Escherichia coli strains for lignocellulosic biomass conversion by metabolic engineering involving transfer of the biodetoxification potential evolved by microbial communities from pulp-mill waste sludge Pérez-Pantoja, Danilo Proyecto (2020)
Genomics and Applied Microbiology for Biodegradation and Bioproducts (GAMBIO) PIA (ACT172128) Proyecto 2018-2020 Inv. Principal
METAGENOMIC EXPLORATION OF HARSH ENVIRONMENTS FOR INCREASING TOLERANCE TO LIGNOCELLULOSE-DERIVED INHIBITORS IN E. COLI FONDECYT (1161750) Proyecto 2016-2018 Inv. Responsable
ST-Flow - Standardization and Orthogonalization of the Gene Expression Flow for Robust Engineering of NTN (new-to-nature) Biological Properties 7th European Union Framework Programme (KBBE 2011.5-289326) Proyecto 2014-2015 Investigador(a)
PROACTIVE - Programmed acceleration of evolution of the biodegradative gene inventory Marie Curie Actions - 7th European Union Framework Programme (FP7-PEOPLE-2009-IIF / MC / 253825) Proyecto 2011-2012 Inv. Principal
BACSIN - Bacterial abiotic celular stress and survival improvement network 7th European Union Framework Programme (FP7-KBBE-2007-1 - 211684) Proyecto 2008-2012 Investigador(a)
Desarrollo y Reprogramación de Sistemas Microbianos AYUDAS A GRUPOS PARA EL DESARROLLO DE PROGRAMAS DE ACTIVIDADES DE I+D EN BIOCIENCIAS - Comunidad Autónoma de Madrid, España (S-SAL-0246-2006 DEREMICROBIANA-CM) Proyecto 2007-2010 Investigador(a)
EXPRESION DE GENES MICROBIANOS INVOLUCRADOS EN EL CATABOLISMO DE COMPUESTOS AROMATICOS, LIGNINA Y HEMICELULOSAS, A NIVEL DE LABORATORIO Y EN EL AMBIENTE FONDECYT (8990004) Proyecto 1999-2003 Tesista
UN MODELO PARA CONOCER LAS BASES MOLECULARES DE LA ADAPTACION DE BACTERIAS AEROBICAS A LA DEGRADACION DE CONTAMINANTES CLOROAROMATICOS=> EXPRESION DE OPERONES CATABOLICOS DE RALSTONIA EUTROPHA FONDECYT (1990149) Proyecto 1999-2002 Tesista
MEJORAMIENTO DE LA CAPACIDAD DE BACTERIAS PARA DEGRADAR CONTAMINANTES CLOROFENOLITICOS MEDIANTE PRESION SELECTIVA Y TRANSFERENCIA DE GENES CATABOLICOS Y EVALUACION DE SU ACTIVIDAD EN MICROCOSMOS DE TRATAMIENTO DE EFLUENTES INDUS FONDECYT (1960262) Proyecto 1996-1998 Tesista


Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales Perez-Pantoja, D; Donoso R.; Agullo, L; Cordova, M; Seeger M.; Pieper, D. H.; Gonzalez, B. Review ISI SCOPUS Environmental Microbiology (2012)
Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134 Perez-Pantoja, D; De la Lglesia, R; Pieper DH; Gonzalez, B. Review ISI FEMS MICROBIOLOGY REVIEWS (2008)

Danilo Pérez

Investigador

Programa Institucional de Fomento a la Investigación, Desarrollo e Innovación

UNIVERSIDAD TECNOLÓGICA METROPOLITANA

Santiago, Chile

Bernardo González

Full Professor

UNIVERSIDAD ADOLFO IBAÑEZ

Santiago, Chile

Raúl Donoso

Investigador

PIDi

Universidad Tecnológica Metropolitana

Santiago, Chile

Thomas Ledger

Associate Professor

UNIVERSIDAD ADOLFO IBÁÑEZ

Santiago, Chile

Marlene Manzano

Coordinador de Investigacion

Universidad Mayor

Santiago, Chile

Luz Vásquez

Profesor Asociado

Genética Molecular y Microbiología

Pontificia Universidad Católica de Chile

Santiago, Chile

Michael Seeger

Full Professor

Chemistry

UNIVERSIDAD TÉCNICA FEDERICO SANTA MARÍA

Valparaíso, Chile

Carlos Farkas

PostDoctoral Fellow

CancerCare Manitoba

University of Manitoba

Winnipeg, Canada

Rodrigo De la Iglesia

Profesor Asociado

Genética Molecular y Microbiología

PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE

Santiago, Chile

Rodrigo Maldonado

Académico Investigador

Universidad Finis Terrae

Santiago, Chile

VERONICA MORGANTE

Gerente de Operaciones

Multiplex Spa

SANTIAGO, Chile

Beatriz Diez

PROFESOR ASOCIADO

GENÉTICA MOLECULAR Y MICROBIOLOGIA

PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE

Santiago, Chile

Leda Guzman

Profesor Adjunto

Instituto de Química

Pontificia Universidad Católica de Valparaíso

Valparaíso, Chile

Lucy Belmar

Profesor asistente adjunto

Facultad de Ciencias de la Vida

Universidad Andrés Bello

Santiago, Chile

Cedric Little

Associated Professor and Director of Research Centre

Engineering and Sciences

Universidad Adolfo Ibáñez

Viña del Mar, Chile

Loreine Agullo

INVESTIGADOR POSDTOCTORAL

FACULTAD DE CIENCIAS

PONTIFICIA UNIVERSIDAD CATOLICA DE VALPARAISO

VALPARAISO, Chile

Daniel Garrido

Associate Professor

Chemical and Bioprocess Engineering

Pontificia Universidad Católica de Chile

Santiago, Chile

Ana Zúñiga

postdoctoral research fellow

Centre de Biologie Structurale

Montpellier, Francia

Alexis Salas

Assistant Professor

Pharmacology

UNIVERSIDAD DE CONCEPCIÓN

Concepción, Chile

Roberto Durán

Investigador (Programa Asistentes Científicos)

Departamento de Química

Universidad Técnica Federico Santa María

Valparaíso, Chile

Nicole Trefault

Vicerrectora de Investigación

UNIVERSIDAD MAYOR

Santiago, Chile

Katia Soto

Académica

Universidad de Chile

Santiago, Chile

María Alcamán

Investigador-Docente

Ingenieria

Universidad del Desarrollo

Concepcion, Chile

Danilo Rodrigo Pérez Pantoja

Líneas de Investigación

Educación

Molecular Genetics and Microbiology, PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE. Chile, 2009

Biochemistry, UNIVERSIDAD DE CHILE. Chile, 1998

Bioinformatics and Computational Biology, UNIVERSIDAD COMPLUTENSE DE MADRID. España, 2012

Biochemist, UNIVERSIDAD DE CHILE. Chile, 2002

Experiencia Académica

Profesor Asistente Full Time

Investigador Full Time

Investigador Postdoctoral Full Time

Premios y Distinciones

Premio Medalla de Honor Hermann Niemeyer

Article (34)

Abstract (1)

BookSection (4)

EditorialMaterial (1)

Proyecto (10)

Genomics and Applied Microbiology for Biodegradation and Bioproducts (GAMBIO)

METAGENOMIC EXPLORATION OF HARSH ENVIRONMENTS FOR INCREASING TOLERANCE TO LIGNOCELLULOSE-DERIVED INHIBITORS IN E. COLI

ST-Flow - Standardization and Orthogonalization of the Gene Expression Flow for Robust Engineering of NTN (new-to-nature) Biological Properties

PROACTIVE - Programmed acceleration of evolution of the biodegradative gene inventory

BACSIN - Bacterial abiotic celular stress and survival improvement network

Desarrollo y Reprogramación de Sistemas Microbianos

EXPRESION DE GENES MICROBIANOS INVOLUCRADOS EN EL CATABOLISMO DE COMPUESTOS AROMATICOS, LIGNINA Y HEMICELULOSAS, A NIVEL DE LABORATORIO Y EN EL AMBIENTE

UN MODELO PARA CONOCER LAS BASES MOLECULARES DE LA ADAPTACION DE BACTERIAS AEROBICAS A LA DEGRADACION DE CONTAMINANTES CLOROAROMATICOS=> EXPRESION DE OPERONES CATABOLICOS DE RALSTONIA EUTROPHA

MEJORAMIENTO DE LA CAPACIDAD DE BACTERIAS PARA DEGRADAR CONTAMINANTES CLOROFENOLITICOS MEDIANTE PRESION SELECTIVA Y TRANSFERENCIA DE GENES CATABOLICOS Y EVALUACION DE SU ACTIVIDAD EN MICROCOSMOS DE TRATAMIENTO DE EFLUENTES INDUS

Review (2)