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Pablo Saenz Agudelo

Associate Professor

Universidad Austral de Chile

Valdivia, Chile

Population dynamics, Marine larval dispersal, population genomics, landscape genomics

Marine Biology , JAMES COOK UNIVERSITY. Australia, 2011
Biological Oceanography, UNIVERSITE PIERRE ET MARIE CURIE-PARIS VI. Francia, 2007
Biologo, Universidad de Antioquia. Colombia, 2004

Post Doctoral fellow Full Time

King Abdullah University of Science & Technology

Thuwal, Arabia Saudí

2011 - 2014
Assistant Professor Full Time

UNIVERSIDAD AUSTRAL DE CHILE

Ciencias

Valdivia, Chile

2014 - 2018
Director Magister en Ciencias mención Genética Other

UNIVERSIDAD AUSTRAL DE CHILE

Ciencias

Valdivia, Chile

2017 - A la fecha
Profesor asociado Full Time

UNIVERSIDAD AUSTRAL DE CHILE

Ciencias

Valdivia, Chile

2019 - A la fecha

Evaluador remoto becas formación de capital humano avanzado Other

CONICYT

Chile

2017 - A la fecha
Grupo de Estudio Biología 1 Other

Conicyt

Chile

2019 - 2019
Grupo de estudio Biología 1 Regular Part Time

ANID

Chile

2022 - 2022

Advising
Postdoctoral
Vanessa Robitzch-Sierra, Universidad Austral de Chile (advisor 2019-2022)
Erwan Delrieu-trottin, Universidad Austral de Chile (advisor 2016-2018)
PhD
Diego Martinez, Universidad Austral de Chile (advisor 2019-2023)
Livia Pelusa, Universidad Austral de Chile (advisor 2017-2023)
Suany Quesada, Universidad Austral de Chile (advisor 2016-2019)
Julian Quintero, Universidad Austral de Chile (co-advisor 2016-2019)
Masters
Paulina Cariman Universidad Austral de Chile (Advisor 2021-2023)
Gabriela Narváez, Universidad Austral de Chile (Advisor 2020-2022)
Fernanda Schmidt, Universidad Austral de Chile (Advisor 2019-2022)
Paula Ramirez, Universidad Austral de Chile (co-advisor 2018-2020)
Sarai Morales-Gonzalez, Universidad Austral de Chile (advisor 2017-2019)
Rocío Paleo, Universidad Austral de Chile (co-advisor 2016-2017)
Ronie Haro, Universidad Austral de Chile (co-advisor 2015-2017)
Laura Brosseau-Acquaviva, Université Paris 6 (co-advisor 2017)
Undergraduate
Camila Munzenmayer, Universidad Austral de Chile (advisor 2022 -2023)
Sarai Gonzales, Universidad Austral de Chile (advisor 2017 -2018)
Joni Poblete, Universidad Austral de Chile (co-advisor 2015-2016)
M. Caceres, Universidad Austral de Chile (co-advisor 2015-2016)

Teaching
Main Instructor Principles of Bioinformatics (Summer course 2018-2019)
Principles of Genetics (Undergraduate 2014-present)
Molecular Ecology (Postgraduate 2015- present)
Principles of Population Genetics (Postgraduate 2016- present)
Invited Lecturer Advanced Genetics (Postgraduate (2015- present)
Evolution (Undergraduate 2014-2019)
Evolution (Postgraduate 2014-2019)
Biodiversity (Undergraduate 2015- present)
Zoology and Ecology (Undergraduate 2017- present)

Association of Naturalists of Chile (Chile, 2020)
ICAEV seminar series for regional high school students (Chile 2017)
Plenary speaker. XII Congreso Regional Escolar de Ciencia y Tecnología del PAR Explora Región de Aysén (Chile, 2017).
Universidad Nacional de Comahue (Argentina 2017)
Roscoff Marine Station. Université Paris 6 (France 2016)
ARC Centre of Excellence for Coral Reef Studies (Australia 2016)
Woods Hole Oceanographic Institution (USA 2015)
Explora “1000 researchers 1000 classrooms” Rural Primary school (Chile 2015)
Explora “1000 researchers 1000 classrooms” Helvetia Primary school, (Chile 2015)
Universidad De Antioquia (Colombia 2014)


Contrasting genetic diversity and structure between endemic and widespread damselfishes are related to differing adaptive strategies Alpermann, Tilman J. Article (2023)
Demographic histories shape population genomics of the common coral grouper ( Plectropomus leopardus ) Payet, Samuel D. Article EVOLUTIONARY APPLICATIONS (2022)
DNA reconciles morphology and colouration in the drunk blenny genus Scartichthys (Teleostei: Blenniidae) and provides insights into their evolutionary history Article ISI JOURNAL OF FISH BIOLOGY (2022)
Monitoring vertebrate biodiversity of a protected coastal wetland using eDNA metabarcoding Article ENVIRONMENTAL DNA (2022)
Morphological and genetic divergence supports peripheral endemism and a recent evolutionary history of Chrysiptera demoiselles in the subtropical South Pacific Kilduff, Liam; Trnski, Thomas; Carvajal, Jose I.; Arranz, Vanessa; Aguirre, J. David Article CORAL REEFS (2022)
Population genomic analyses reveal hybridization and marked differences in genetic structure of Scurria limpet sister species with parapatric distributions across the South Eastern Pacific Peluso, Lívia Article ECOLOGY AND EVOLUTION (2022)
Pre-domestication bottlenecks of the cultivated seaweed Gracilaria chilensis Molina, Cristian Rios; Guillemin, Marie-Laure Article ISI MOLECULAR ECOLOGY (2022)
Rank change and growth within social hierarchies of the orange clownfish, Amphiprion percula Article MARINE BIOLOGY (2022)
The complete mitochondrial genome of the true limpet Scurria scurra (Lottiidae) Article MITOCHONDRIAL DNA PART B-RESOURCES (2022)
Genetic diversity and kinship relationships in one of the largest South American fur seal (Arctocephalus australis) populations of the Pacific Ocean Seguel, Mauricio; Verdugo, Claudio Article ISI ECOLOGY AND EVOLUTION (2021)
Genomic landscape of geographically structured colour polymorphism in a temperate marine fish Article MOLECULAR ECOLOGY (2021)
Larval dispersal and fishing pressure influence recruitment in a coral reef fishery Lozano?Cortés, Diego; Pita, John; Gereniu, Collin; Waldie, Pete A.; Peterson, Nate Article JOURNAL OF APPLIED ECOLOGY (2021)
Pinpointing genetic breaks in the southeastern Pacific: Phylogeography and genetic structure of a commercially important tunicate Article JOURNAL OF BIOGEOGRAPHY (2021)
Stochastic nature of larval dispersal at sea Harrison, HH Article MOLECULAR ECOLOGY (2021)
An Out-of-Patagonia migration explains the worldwide diversity and distribution of Saccharomyces eubayanus lineages Nespolo, Roberto F.; Cubillos, Francisco A. Article ISI PLOS GENETICS (2020)
Comparative phylogeography of three host sea anemones in the Indo-Pacific Emms M.A.; Beldade R.; Berumen, M. L. Article ISI SCOPUS JOURNAL OF BIOGEOGRAPHY (2020)
Coping with Pleistocene climatic fluctuations: Demographic responses in remote endemic reef fishes Rapu Edmunds, Cristian Article MOLECULAR ECOLOGY (2020)
Population genomic response to geographic gradients by widespread and endemic fishes of the Arabian Peninsula Cagua, Edgar Fernando; Choat, John Howard; Kessel, Steven T. Article ECOLOGY AND EVOLUTION (2020)
Travel with your kin ship! Insights from genetic sibship among settlers of a coral damselfish Article ECOLOGY AND EVOLUTION (2020)
Fine-scale hierarchical genetic structure and kinship analysis of the ascidian Pyura chilensis in the southeastern Pacific Morales-Gonzalez, Sarai; Giles, Emily C.; Quesada-Calderon, Suany Article ISI SCOPUS ECOLOGY AND EVOLUTION (2019)
Strong habitat and weak genetic effects shape the lifetime reproductive success in a wild clownfish population Article ISI ECOLOGY LETTERS (2019)
Understanding the origin of the most isolated endemic reef fish fauna of the Indo-Pacific: Coral reef fishes of Rapa Nui Brosseau-Acquaviva L.; Mona S.; Rapu-Edmunds C. Article ISI SCOPUS JOURNAL OF BIOGEOGRAPHY (2019)
Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus)=> current status and its characteristics. DiBattista, Joseph D; Wang, Xin; Saenz-Agudelo, Pablo; Piatek, Marek J; Aranda, Manuel; Berumen, Michael L Article Molecular ecology resources (2018)
Evidence of cryptic species in the blenniid Cirripectes alboapicalis species complex, with zoogeographic implications for the South Pacific Liggins, L; Trnski, T; Williams, JT; Rapu-Edmundss, C; Planes S. Article ISI ZOOKEYS (2018)
High-Throughput Sequencing and Linkage Mapping of a Clownfish Genome Provide Insights on the Distribution of Molecular Players Involved in Sex Change Irigoien, X Article ISI SCOPUS Scientific Reports (2018)
Comparative phylogeography of reef fishes from the Gulf of Aden to the Arabian Sea reveals two cryptic lineages McIlwain J.H. Article ISI SCOPUS CORAL REEFS (2017)
Larval fish dispersal in a coral-reef seascape Srinivasan M.; Sinclair-Taylor T. Article ISI SCOPUS NATURE ECOLOGY & EVOLUTION (2017)
Marine Dispersal Scales Are Congruent over Evolutionary and Ecological Time Pinsky, Malin L.; Saenz-Agudelo, Pablo; Salles, Océane C.; Almany, Glenn R.; Bode, Michael; Berumen, Michael L.; Andréfouët, Serge; Jones, Geoffrey P. Article ISI SCOPUS CURRENT BIOLOGY (2017)
Marine Dispersal Scales Are Congruent over Evolutionary and Ecological Time Pinsky, Malin L.; Saenz-Agudelo, Pablo; Salles, Océane C.; Almany, Glenn R.; Bode, Michael; Berumen, Michael L.; Andréfouët, Serge; Thorrold, Simon R.; Jones, Geoffrey P.; Planes, Serge Article CURRENT BIOLOGY (2017)
Microsatellites Reveal Genetic Homogeneity among Outbreak Populations of Crown-of-Thorns Starfish (Acanthaster cf. solaris) on Australia's Great Barrier Reef Harrison, Hugo; Pratchett, Morgan; Messmer, Vanessa; Saenz-Agudelo, Pablo; Berumen, Michael Article ISI DIVERSITY-BASEL (2017)
Novel microsatellite markers for Pyura chilensis reveal fine-scale genetic structure along the southern coast of Chile Article SCOPUS Marine Biodiversity (2017)
Novel microsatellite markers for Pyura chilensis reveal fine-scale genetic structure along the southern coast of Chile Giles, Emily; Petersen-Zuñiga, C; Morales-Gonzales, S; Calderon-Quesada, S; Saenz-Agudelo, P Article Marine Biodiversity (2017)
Reef-fish larval dispersal patterns validate no-take marine reserve network connectivity that links human communities Abesamis R.A.; Jadloc C.R.L.; Solera L.A.; Villanoy C.L.; Bernardo L.P.C.; Alcala A.C.; Russ G.R. Article ISI SCOPUS CORAL REEFS (2017)
Using a butterflyfish genome as a general tool for RAD-Seq studies in specialized reef fish Article ISI SCOPUS MOLECULAR ECOLOGY RESOURCES (2017)
Using a butterflyfish genome as a general tool for RAD-Seq studies in specialized reef fish. DiBattista, Joseph D; Saenz-Agudelo, Pablo; Piatek, Marek J; Wang, Xin; Aranda, Manuel; Berumen, Michael L Article Molecular ecology resources (2017)
Widespread hybridization and bidirectional introgression in sympatric species of coral reef fish Harrison, Hugo B.; Berumen, Michael L.; Saenz-Agudelo, Pablo; Salas, Eva; Williamson, David H.; Jones, Geoffrey P. Article ISI SCOPUS Molecular Ecology (2017)
A review of contemporary patterns of endemism for shallow water reef fauna in the Red Sea. DiBattista, J. D., Roberts, M. B., Bouwmeester, J., Bowen, B. W., Coker, D. J., Lozano-Cortés, D. F., Howard Choat, J., Gaither, M. R., Hobbs, J.-P. A., Khalil, M. T., Kochzius, M., Myers, R. F., Paulay, G., Robitzch, V. S. N., Saenz-Agudelo, P., Salas, E Article JOURNAL OF BIOGEOGRAPHY (2016)
Characterization and cross-amplification of microsatellite markers in four species of anemonefish (Pomacentridae, Amphiprion spp.) Harrison, H. B.; van der Meer M.H.; Mansour H.; Perumal S.; Jones, G. P.; Berumen, M. L. Article ISI SCOPUS MARINE BIODIVERSITY (2016)
Development and characterization of new polymorphic microsatellite markers in four sea anemones: Entacmaea quadricolor, Heteractis magnifica, Stichodactyla gigantea, and Stichodactyla mertensii Gatins R. Article SCOPUS MARINE BIODIVERSITY (2016)
Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): Current status and its characteristics Article SCOPUS MOLECULAR ECOLOGY RESOURCES (2016)
Draft genome of an iconic Red Sea reef fish, the blacktail butterflyfish (Chaetodon austriacus): current status and its characteristics DiBattista Joseph; Wang Xin,Saenz‐ Agudelo Pablo; Piatek Marek J; Aranda Manuel; Berumen Michael L Article Molecular Ecology Resources (2016)
First genealogy for a wild marine fish population reveals multigenerational philopatry Salles, Océane C.; Pujol, Benoit; Maynard, Jeffrey A.; Almany, Glenn R.; Berumen, Michael L.; Jones, Geoffrey P.; Saenz-Agudelo, Pablo; Srinivasan, Maya; Thorrold, Simon R.; Planes, Serge Article PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
First genealogy for a wild marine fish population reveals multigenerational philopatry Pujol, B Article ISI SCOPUS PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2016)
Genetic tools link long-term demographic and life-history traits of anemonefish to their anemone hosts Salles, Océane C.; Saenz-Agudelo, Pablo; Almany, Glenn R.; Berumen, Michael L.; Jones, Geoffrey P. Article ISI SCOPUS CORAL REEFS (2016)
Large-scale, multidirectional larval connectivity among coral reef fish populations in the Great Barrier Reef Marine Park Williamson, David H.; Harrison, Hugo B.; Almany, Glenn R.; Berumen, Michael L.; Bode, Michael; Bonin, Mary C.; Choukroun, Severine; Doherty, Peter J.; Frisch, Ashley J.; Saenz-Agudelo, Pablo; Jones, Geoffrey P. Article MOLECULAR ECOLOGY (2016)
Large-scale, multidirectional larval connectivity among coral reef fish populations in the Great Barrier Reef Marine Park Choukroun, S; Doherty, PJ Article ISI SCOPUS MOLECULAR ECOLOGY (2016)
Seascape and life-history traits do not predict self-recruitment in a coral reef fish Nanninga, G; Jones, Geoffrey P.; Saenz-Agudelo, Pablo; Almany, Glenn R.; Berumen, Michael L. Article ISI SCOPUS BIOLOGY LETTERS (2016)
Seascape and life-history traits do not predict self-recruitment in a coral reef fish Herrera Marcela; Nanninga Gerrit B; Planes Serge; Jones Geoffrey P ; Thorrold Simon R; Saenz-Agudelo Pablo; Almany Glenn R; Berumen Michael L Article Biology Letters (2016)
The role of marine reserves in the replenishment of a locally impacted population of anemonefish on the Great Barrier Reef. Bonin, Mary C; Harrison, Hugo B; Williamson, David H; Frisch, Ashley J; Saenz-Agudelo, Pablo; Berumen, Michael L; Jones, Geoffrey P Article Molecular ecology (2016)
Characterization of 11 novel microsatellite markers for the vagabond butterflyfish, Chaetodon vagabundus Saenz-Agudelo, P; Almany, GR; Mansour, H; Perumal, S; Berumen, ML Article CONSERVATION GENETICS RESOURCES (2015)
Coral reef fish populations can persist without immigration. Salles, Océane C; Maynard, Jeffrey A; Joannides, Marc; Barbu, Corentin M; Saenz-Agudelo, Pablo; Almany, Glenn R; Berumen, Michael L; Thorrold, Simon R; Jones, Geoffrey P; Planes, Serge Article Proceedings. Biological sciences / The Royal Society (2015)
Development of polymorphic microsatellite loci for conservation genetic studies of the coral reef fish Centropyge bicolor Herrera, M; Saenz-Agudelo, P; Nanninga, GB; Berumen, ML Article JOURNAL OF FISH BIOLOGY (2015)
Exploring seascape genetics and kinship in the reef sponge Stylissa carteri in the Red Sea. Giles, Emily C; Saenz-Agudelo, Pablo; Hussey, Nigel E; Ravasi, Timothy; Berumen, Michael L Article Ecology and evolution (2015)
Isolation and characterization of 29 microsatellite markers for the bumphead parrotfish, Bolbometopon muricatum, and cross amplification in 12 related species Article ISI Marine Biodiversity (2015)
Linking local retention, self-recruitment, and persistence in marine metapopulations Lett, C; Tri, NH; Cuif, M; Saenz-Agudelo, P; Kaplan, DM Article ECOLOGY (2015)
Microsatellite multiplex assay for the coral-eating crown-of-thorns starfish, Acanthaster cf. planci Harrison, HB; Saenz-Agudelo, P; Al-Salamah, M; Messmer, V; Pratchett, MS; Berumen, ML Article CONSERVATION GENETICS RESOURCES (2015)
Mothers matter: contribution to local replenishment is linked to female size, mate replacement and fecundity in a fish metapopulation Saenz-Agudelo, P; Jones, GP; Thorrold, SR; Planes, S Article MARINE BIOLOGY (2015)
Not finding Nemo: limited reef-scale retention in a coral reef fish Nanninga, GB; Saenz-Agudelo, P; Zhan, P; Hoteit, I; Berumen, ML Article CORAL REEFS (2015)
Seascape genetics along environmental gradients in the Arabian Peninsula: insights from ddRAD sequencing of anemonefishes. Saenz-Agudelo, Pablo; Dibattista, Joseph D; Piatek, Marek J; Gaither, Michelle R; Harrison, Hugo B; Nanninga, Gerrit B; Berumen, Michael L Article Molecular ecology (2015)
Environmental gradients predict the genetic population structure of a coral reef fish in the Red Sea. Nanninga, Gerrit B; Saenz-Agudelo, Pablo; Manica, Andrea; Berumen, Michael L Article Molecular ecology (2014)
Development of 35 novel microsatellite markers for the two-band anemonefish Amphiprion bicinctus Nanninga, Gerrit; Mughal, Mehreen; Saenz-Agudelo, Pablo; Bayer, Till; Berumen, Michael L. Article ISI CONSERVATION GENETICS RESOURCES (2013)
Dispersal of grouper larvae drives local resource sharing in a coral reef fishery. Almany, Glenn R; Hamilton, Richard J; Bode, Michael; Matawai, Manuai; Potuku, Tapas; Saenz-Agudelo, Pablo; Planes, Serge; Berumen, Michael L; Rhodes, Kevin L; Thorrold, Simon R; Russ, Garry R; Jones, Geoffrey P Article Current biology : CB (2013)
Novel polymorphic microsatellite markers developed for a common reef sponge, Stylissa carteri Giles, E; Berumen, M Article ISI MARINE BIODIVERSITY (2013)
On minimizing assignment errors and the trade-off between false positives and negatives in parentage analysis. Harrison, Hugo B; Saenz-Agudelo, Pablo; Planes, Serge; Jones, Geoffrey P; Berumen, Michael L Article Molecular ecology (2013)
Relative accuracy of three common methods of parentage analysis in natural populations. Harrison, Hugo B; Saenz-Agudelo, Pablo; Planes, Serge; Jones, Geoffrey P; Berumen, Michael L Article Molecular ecology (2013)
Taxonomic, spatial and temporal patterns of bleaching in anemones inhabited by anemonefishes. Hobbs, Jean-Paul A; Frisch, Ashley J; Ford, Benjamin M; Thums, Michele; Saenz-Agudelo, Pablo; Furby, Kathryn A; Berumen, Michael L Article PloS one (2013)
The status of coral reef ecology research in the Red Sea Berumen, M; Hoey, A; Bass, W; Catania, D.; Cochran, J. E. M.; Khalil, M. T.; Miyake, S.; Mughal, M. R.; Spaet, J. L. Y. Article ISI CORAL REEFS (2013)
Patterns and persistence of larval retention and connectivity in a marine fish metapopulation. Saenz-Agudelo, Pablo; Jones, Geoffrey P; Thorrold, Simon R; Planes, Serge Article Molecular ecology (2012)
Persistence of self-recruitment and patterns of larval connectivity in a marine protected area network. Berumen, Michael L; Almany, Glenn R; Planes, Serge; Jones, Geoffrey P; Saenz-Agudelo, Pablo; Thorrold, Simon R Article Ecology and evolution (2012)
Connectivity dominates larval replenishment in a coastal reef fish metapopulation. Saenz-Agudelo, Pablo; Jones, Geoffrey P; Thorrold, Simon R; Planes, Serge Article Proceedings. Biological sciences / The Royal Society (2011)
Detrimental effects of host anemone bleaching on anemonefish populations. Saenz-Agudelo P, Jones GP, Thorrold S, Planes S. Article CORAL REEFS (2011)
Estimating connectivity in marine populations: an empirical evaluation of assignment tests and parentage analysis under different gene flow scenarios. Saenz-Agudelo, P; Jones, G P; Thorrold, S R; Planes, S Article Molecular ecology (2009)


Deciphering the complex evolutionary history of a domesticated red alga within the Pacific Ocean using population genomics Guillemin, Marie Laure; Valero, Myriam; Arakaki, Natalia; Stoeckel Solen; Nelson, Wendy Proyecto (2017)
Disentangling the complexity of the Antarctic marine benthic food webs through multivariate approaches Guillemin, Marie Laure; McMahon Kelton; Leray Mathieu; Beckerman Andrew Proyecto (2016)
Understanding larval dispersal and population connectivity in an economically and ecologically important marine tunicate in Chile: Empirical evaluation of the influence of seascape configuration and local oceanographic settings Proyecto (2014)
Monitoreo de biodiversidad y detección de especies crípticas del humedal del Río Cruces mediante ADN ambiental Delrieu-Trottin, Erwan Proyecto (0)
Speciation genomics in marine organisms: Scurria limpets as a novel model to study the evolution of genomic divergence Nespolo, Roberto Proyecto (0)
Studying the biology of a relict mammal, Dromiciops gliroides using landscape genomics and isotopic ecology Nespolo, Roberto Proyecto (0)