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Fumito MARUYAMA

Professor

Hiroshima University

Higashi-Hiroshima, Japón

Microbial Genomics and Ecology Multi-omics Bioaerosol Holobiome Prokaryotic defense system

Microbiology, OSAKA UNIVERSITY. Japón, 2005
Microbiology, Osaka University. Japón, 2002

Professor Full Time

Hiroshima University

Japón

2019 - A la fecha
Professor (ad honorem) Other

Universidad de La Frontera

Chile

2018 - A la fecha
Principal Investigator Full Time

JST/JICA, SATREPS

Japón

2017 - A la fecha
Associate Professor Full Time

Kyoto University

Japón

2014 - 2019
Associate Professor Full Time

Tokyo Medical and Dental University

Japón

2010 - 2014


Ecogenomics of the Marine Benthic Filamentous Cyanobacterium Adonisia Walter, Juline M.; Coutinho, Felipe H.; Leomil, Luciana; Hargreaves, Paulo I.; Campeao, Mariana E.; Silva, Beatriz S.; Fistarol, Giovana O.; Hosokawa, Masashi; Miyashita, Hideaki; Maruyama, Fumito; et al. Article ISI MICROBIAL ECOLOGY (2020)
Persistent colonization of non-lymphoid tissue-resident macrophages by Stenotrophomonas maltophilia Takahashi, Ichiro; Hosomi, Koji; Nagatake, Takahiro; Toubou, Hirokazu; Yamamoto, Daiki; Hayashi, Ikue; Kurashima, Yosuke; Sato, Shintaro; Shibata, Naoko; Goto, Yoshiyuki; et al. Article ISI INTERNATIONAL IMMUNOLOGY (2020)
Airborne Microbial Communities at High-Altitude and Suburban Sites in Toyama, Japan Suggest a New Perspective for Bioprospecting Tanaka, Daisuke; Sato, Kei; Goto, Motoshi; Fujiyoshi, So; Maruyama, Fumito; Takato, Shunsuke; Shimada, Takamune; Sakatoku, Akihiro; Aoki, Kazuma; Nakamura, Shogo Article ISI FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2019)
Antarctic Streptomyces fildesensis So13.3 strain as a promising source for antimicrobials discovery Núñez-Montero, Kattia; Lamilla, Claudio; Maruyama, Fumito; Barrientos, Leticia Article ISI SCOPUS Scientific Reports (2019)
Draft genome sequences of Mycolicibacterium peregrinum isolated from a pig with lymphadenitis and from soil on the same Japanese pig farm Komatsu T.; Odoi J.O. Article ISI SCOPUS BMC Research Notes (2019)
Editorial: Bioprospecting and Biotechnology of Extremophiles Maruyama, Fumito Article ISI SCOPUS FRONTIERS IN BIOENGINEERING AND BIOTECHNOLOGY (2019)
Genetic relatedness of Mycobacterium avium subsp. hominissuis isolates from bathrooms of healthy volunteers, rivers, and soils in Japan with human clinical isolates from different geographical areas Arikawa, Kentaro; Ichijo, Tomoaki; Nakajima, Satomi; Nishiuchi, Yukiko; Tamaru, Aki; Yoshida, Shiomi; Maruyama, Fumito; Nasu, Masao; Starkova, Daria A.; Mokrousov, Igor; et al. Article ISI INFECTION GENETICS AND EVOLUTION (2019)
Genotypic diversity of Streptococcus suis and the S. suis-like bacterium Streptococcus ruminantium in ruminants Matoba Y.; Osawa A.; Sadaat S.M. Article ISI SCOPUS VETERINARY RESEARCH (2019)
Phenotypic and genotypic analyses of antimicrobial resistant bacteria in livestock in Uganda Yossapol, Montira; Maruyama, Fumito; Wampande, Eddie M.; Kakooza, Steven; Ohya, Kenji; Tsuchida, Sayaka; Asai, Tetsuo; Kabasa, John D.; Ushida, Kazunari Article ISI Transboundary and Emerging Diseases (2019)
The recombination-cold region as an epidemiological marker of recombinogenic opportunistic pathogen Mycobacterium avium Yano, Hirokazu; Suzuki, Haruo; Maruyama, Fumito; Iwamoto, Tomotada Article ISI BMC GENOMICS (2019)
Assessment of pig saliva as a Streptococcus suis reservoir and potential source of infection on farms by use of a novel quantitative polymerase chain reaction assay Arai, Sakura; Kim, Hyunjung; Watanabe, Takayasu; Tohya, Mari; Suzuki, Eriko; Ishida-Kuroki, Kasumi; Maruyama, Fumito; Murase, Kazunori; Sekizaki, Tsutomu Article ISI AMERICAN JOURNAL OF VETERINARY RESEARCH (2018)
Complete Genome Sequence of the Nonheterocystous Cyanobacterium Pseudanabaena sp. ABRG5-3 Tajima, Naoyuki; Kanesaki, Yu; Sato, Shusei; Yoshikawa, Hirofumi; Maruyama, Fumito; Kurokawa, Ken; Ohta, Hiroyuki; Nishizawa, Tomoyasu; Asayama, Munehiko; Sato, Naoki Article ISI MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2018)
Draft Genome Sequence of a Shewanella halifaxensis Strain Isolated from the Intestine of Marine Red Seabream (Pagrus major), Which Includes an Integrative Conjugative Element with Macrolide Resistance Genes Sugimoto, Yuta; Maruyama, Fumito Article ISI MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2018)
Draft Genome Sequence of Mycobacterium virginiense Strain GF75, Isolated from the Mud of a Swine Farm in Japan Ito, Toshihiro; Maruyama, Fumito; Sawai, Kotaro; Nozaki, Keiko; Otsu, Keiko Article ISI MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2018)
Draft genome sequences of bacteria isolated from the Deschampsia antarctica phyllosphere Cid, FP; Maruyama, F; Murase, K; Larama, G; Bravo, LA Article ISI SCOPUS EXTREMOPHILES (2018)
Draft Genome Sequences of Mycolicibacter senuensis Isolate GF74 and Mycobacterium colombiense Isolates GF28 and GF76 from a Swine Farm in Japan Sawai K.; Kawai M.; Nozaki K.; Otsu K.; Fukushi H.; Ohya K. Article WOS-ESCI SCOPUS Microbiology Resource Announcements (2018)
Interplay of a non-conjugative integrative element and a conjugative plasmid in the spread of antibiotic resistance via suicidal plasmid transfer from an aquaculture Vibrio isolate Nonaka, Lisa; Maruyama, Fumito; Hirose, Yuu; Onishi, Yuki; Kobayashi, Takeshi; Suzuki, Satoru; Masuda, Michiaki Article ISI PloS one (2018)
Loss of Bacitracin Resistance Due to a Large Genomic Deletion among Bacillus anthracis Strains Furuta, Yoshikazu; Harima, Hayato; Ito, Emiko; Maruyama, Fumito; Ohnishi, Naomi; Osaki, Ken; Ogawa, Hirohito; Squarre, David; Hang'ombe, Bernard Mudenda; Higashi, Hideaki Article ISI MSYSTEMS (2018)
A Locus Encoding Variable Defense Systems against Invading DNA Identified in Streptococcus suis Okura, Masatoshi; Nozawa, Takashi; Takamatsu, Daisuke; Osaki, Makoto; Gottschalk, Marcelo; Hamada, Shigeyuki; Maruyama, Fumito Article ISI Genome Biology and Evolution (2017)
Genetic diversity of environmental Vibrio cholerae O1 strains isolated in Northern Vietnam Takemura, Taichiro; Maruyama, Fumito; Thi Luong Tran; Dong Tu Nguyen; Tu Cuong Ngo; Thi Hang Nguyen; Tokizawa, Asako; Morita, Masatomo; Ohnishi, Makoto; Binh Minh Nguyen; et al. Article ISI INFECTION GENETICS AND EVOLUTION (2017)
Genomic Characteristics of Bifidobacterium thermacidophilum Pig Isolates and Wild Boar Isolates Reveal the Unique Presence of a Putative Mobile Genetic Element with tetW for Pig Farm Isolates Maruyama, Fumito; Toyoda, Atsushi; Okuma, Moriya Article ISI FRONTIERS IN MICROBIOLOGY (2017)
Infection Sources of a Common Non-tuberculous Mycobacterial Pathogen, Mycobacterium avium Complex Maruyama, Fumito Article ISI FRONTIERS IN MEDICINE (2017)
Investigation of potential targets of Porphyromonas CRISPRs among the genomes of Porphyromonas species Shibasaki, Masaki; Maruyama, Fumito Article ISI PloS one (2017)
Population Structure and Local Adaptation of MAC Lung Disease Agent Mycobacterium avium subsp hominissuis Nakajima, Chie; Narvskaya, Olga; Nakanishi, Noriko; Ato, Manabu; Suzuki, Yasuhiko; Maruyama, Fumito Article ISI Genome Biology and Evolution (2017)
Transmission of Airborne Bacteria across Built Environments and Its Measurement Standards: A Review Maruyama, Fumito Article ISI FRONTIERS IN MICROBIOLOGY (2017)
YvqE and CovRS of Group A Streptococcus Play a Pivotal Role in Viability and Phenotypic Adaptations to Multiple Environmental Stresses Roobthaisong, Amonrattana; Aikawa, Chihiro; Maruyama, Fumito Article ISI PloS one (2017)
Comparative Genome Analyses of Streptococcus suis Isolates from Endocarditis Demonstrate Persistence of Dual Phenotypic Clones Maruyama, Fumito; Athey, Taryn B. T.; Fittipaldi, Nahuel Article ISI PloS one (2016)
Complete Genome Sequences of Broad-Host-Range Pseudomonas aeruginosa Bacteriophages Phi R18 and Phi S12-1 Furusawa, Takaaki; Iwano, Hidetomo; Maruyama, Fumito Article ISI MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2016)
Distinct interacting core taxa in co-occurrence networks enable discrimination of polymicrobial oral diseases with similar symptoms Shiba, Takahiko; Kachi, Hirokazu; Koyanagi, Tatsuro; Maruyama, Noriko; Takeuchi, Yasuo; Maruyama, Fumito; Izumi, Yuichi Article ISI Scientific Reports (2016)
DNA-based culture-independent analysis detects the presence of group a streptococcus in throat samples from healthy adults in Japan Kulkarni, Tejaswini; Maruyama, Fumito Article ISI BMC MICROBIOLOGY (2016)
Domestication and cereal feeding developed domestic pig-type intestinal microbiota in animals of suidae Maruyama, Fumito Article ISI ANIMAL SCIENCE JOURNAL (2016)
Effect of phosphorus addition on total and alkaline phosphomonoesterase-harboring bacterial populations in ryegrass rhizosphere microsites Article ISI SCOPUS BIOLOGY AND FERTILITY OF SOILS (2016)
Enantioselective Utilization of D-Amino Acids by Deep-Sea Microorganisms Kubota, Takaaki; Kobayashi, Tohru; Nunoura, Takuro; Maruyama, Fumito; Deguchi, Shigeru Article ISI FRONTIERS IN MICROBIOLOGY (2016)
Rhizobacterial Community Structures Associated with Native Plants Grown in Chilean Extreme Environments Article ISI SCOPUS MICROBIAL ECOLOGY (2016)
Sequencing and analysis of the complete organellar genomes of Parmales, a closely related group to Bacillariophyta (diatoms) Saitoh, Kenji; Maruyama, Fumito; Ichinomiya, Mutsuo; Yoshikawa, Shinya; Kuwata, Akira Article ISI CURRENT GENETICS (2016)
Characterization of 3 Megabase-Sized Circular Replicons from Vibrio cholerae Okada, Kazuhisa; Natakuathung, Wirongrong; Na-Ubol, Mathukorn; Wongboot, Warawan; Maruyama, Fumito; Chantaroj, Siriporn Article ISI EMERGING INFECTIOUS DISEASES (2015)
Comparative genome analysis and identification of competitive and cooperative interactions in a polymicrobial disease Endo, Akiko; Ogata, Nachiko; Arakawa, Shinichi; Maruyama, Fumito Article ISI ISME JOURNAL (2015)
Deep sequencing analysis of the heterogeneity of seed and commercial lots of the bacillus Calmette-Guerin (BCG) tuberculosis vaccine substrain Tokyo-172 Wada, Takayuki; Maruyama, Fumito; Maeda, Shinji; Yamamoto, Taro; Yamamoto, Saburo; Ohara, Naoya Article ISI Scientific Reports (2015)
Genetic profiles of Propionibacterium acnes and identification of a unique transposon with novel insertion sequences in sarcoid and non-sarcoid isolates Minegishi, Kana; Furukawa, Asuka; Uchida, Keisuke; Suzuki, Yoshimi; Akashi, Takumi; Maruyama, Fumito; Eishi, Yoshinobu Article ISI Scientific Reports (2015)
Identification of a gene cluster responsible for hydrogen evolution in Vibrio tritonius strain AM2 with transcriptional analyses Matsumura, Yuta; Al-saari, Hidayu; Maruyama, Fumito; Sawabe, Toko Article ISI INTERNATIONAL JOURNAL OF HYDROGEN ENERGY (2015)
Novel macrolide-resistance genes, mef(C) and mph(G), carried by plasmids from Vibrio and Photobacterium isolated from sediment and seawater of a coastal aquaculture site Article ISI LETTERS IN APPLIED MICROBIOLOGY (2015)
Reappraisal of the taxonomy of Streptococcus suis serotypes 20, 22 and 26: Streptococcus parasuis sp nov. Ishida, S.; Osawa, Ro Article ISI INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY (2015)
Time-series metagenomic analysis reveals robustness of soil microbiome against chemical disturbance Kato, Hiromi; Mori, Hiroshi; Maruyama, Fumito; Oshima, Kenshiro; Endo, Ryo; Fuchu, Genki; Miyakoshi, Masatoshi; Dozono, Ayumi; Ohtsubo, Yoshiyuki; Nagata, Yuji; et al. Article ISI DNA RESEARCH (2015)
Analysis of the complete plastid genome of the unicellular red alga Porphyridium purpureum Maruyama, Fumito; Tabata, Satoshi; Sekine, Kohsuke; Moriyama, Takashi Article ISI JOURNAL OF PLANT RESEARCH (2014)
Analysis of the factors affecting the formation of the microbiome associated with chronic osteomyelitis of the jaw Harada, K. Article ISI CLINICAL MICROBIOLOGY AND INFECTION (2014)
Bacterial community structures in rhizosphere microsites of ryegrass (Lolium perenne var. Nui) as revealed by pyrosequencing Lagos, LM; Navarrete, OU; Maruyama, F; Crowley, DE; Cid, FP; Mora, ML Article ISI SCOPUS BIOLOGY AND FERTILITY OF SOILS (2014)
Comparative Genomic Characterization of a Thailand-Myanmar Isolate, MS6, of Vibrio cholerae O1 El Tor, Which Is Phylogenetically Related to a "US Gulf Coast" Clone Maruyama, Fumito Article ISI PloS one (2014)
Design and Experimental Application of a Novel Non-Degenerate Universal Primer Set that Amplifies Prokaryotic 16S rRNA Genes with a Low Possibility to Amplify Eukaryotic rRNA Genes Maruyama, Fumito Article ISI DNA RESEARCH (2014)
Development of a Two-Step Multiplex PCR Assay for Typing of Capsular Polysaccharide Synthesis Gene Clusters of Streptococcus suis lachance, ClauDe; Maruyama, Fumito; Rossignol, Celine Article ISI JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Intraindividual variation in core microbiota in peri-implantitis and periodontitis Maruyama, Fumito Article ISI Scientific Reports (2014)
Klebsormidium flaccidum genome reveals primary factors for plant terrestrial adaptation Hori, Koichi; Maruyama, Fumito; Fujisawa, Takatomo; Togashi, Tomoaki; Yamamoto, Nozomi; Seo, Mitsunori; Sato, Syusei; Yamada, Takuji; Ikeuchi, Masahiko; Watanabe, Mai; et al. Article ISI NATURE COMMUNICATIONS (2014)
Rab17-mediated recycling endosomes contribute to autophagosome formation in response to Group A Streptococcus invasion Haobam, Bijaya; Minowa-Nozawa, Atsuko; Tanaka, Misako; Oda, Seiichiro; Maruyama, Fumito Article ISI CELLULAR MICROBIOLOGY (2014)
The nitrogen cycle in cryoconites: naturally occurring nitrification-denitrification granules on a glacier Segawa, Takahiro; Ohte, Nobuhito; Akiyoshi, Ayumi; Yamada, Akinori; Maruyama, Fumito; Li, Zhongqin; Hongoh, Yuichi; Takeuchi, Nozomu Article ISI ENVIRONMENTAL MICROBIOLOGY (2014)
Various pAQU plasmids possibly contribute to disseminate tetracycline resistance gene tet(M) among marine bacterial community Maruyama, Fumito Article ISI FRONTIERS IN MICROBIOLOGY (2014)
CRISPR Regulation of Intraspecies Diversification by Limiting IS Transposition and Intercellular Recombination Maruyama, Fumito Article ISI Genome Biology and Evolution (2013)
Genetic Analysis of Capsular Polysaccharide Synthesis Gene Clusters from All Serotypes of Streptococcus suis: Potential Mechanisms for Generation of Capsular Variation Maruyama, Fumito; Kumagai, Yumi Article ISI APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2013)
Phytate addition to soil induces changes in the abundance and expression of Bacillus beta-propeller phytase genes in the rhizosphere Saavedra, N; Maruyama, F; Richardson, AE; Crowley, DE; Catrilaf, RD; Henriquez, EJ Article ISI SCOPUS FEMS MICROBIOLOGY ECOLOGY (2013)
Updating the Vibrio clades defined by multilocus sequence phylogeny: proposal of eight new clades, and the description of Vibrio tritonius sp nov. Feng Gao; Amin, A. K. M. Rohul; Kumar, Ramesh; Fukui, Yohei; Satomi, Masataka; Matsushima, Ryoji; Gomez-Gil, Bruno; Christen, Richard; Maruyama, Fumito Article ISI FRONTIERS IN MICROBIOLOGY (2013)
Complete Genome Sequence of Acidovorax sp Strain KKS102, a Polychlorinated-Biphenyl Degrader Maruyama, Fumito; Mitsui, Hisayuki Article ISI JOURNAL OF BACTERIOLOGY (2012)
Complete Genome Sequence of the Serotype k Streptococcus mutans Strain LJ23 Furukawa, Nayuta; Nakano, Kazuhiko; Maruyama, Fumito; Ooshima, Takashi Article ISI JOURNAL OF BACTERIOLOGY (2012)
Novel Conjugative Transferable Multiple Drug Resistance Plasmid pAQU1 from Photobacterium damselae subsp damselae Isolated from Marine Aquaculture Environment Maruyama, Fumito; Miyamoto, Manabu Article ISI MICROBES AND ENVIRONMENTS (2012)
The small GTPases Rab9A and Rab23 function at distinct steps in autophagy during Group A Streptococcus infection Goda, Akira; Maruyama, Fumito Article ISI CELLULAR MICROBIOLOGY (2012)
Complete Genome Sequence of the Bacterium Porphyromonas gingivalis TDC60, Which Causes Periodontal Disease Maruyama, Fumito; Aoki, Akinobu; Okano, Soichiro; Shibata, Yasuko; Abiko, Yoshimitsu Article ISI JOURNAL OF BACTERIOLOGY (2011)
CRISPR Inhibition of Prophage Acquisition in Streptococcus pyogenes Maruyama, Fumito Article ISI PloS one (2011)
Genomic Structure of the Cyanobacterium Synechocystis sp PCC 6803 Strain GT-S Maruyama, Fumito; Kaneko, Takakazu; Sasaki, Naobumi V. Article ISI DNA RESEARCH (2011)
Reactive oxygen species induced by Streptococcus pyogenes invasion trigger apoptotic cell death in infected epithelial cells Maruyama, Fumito; Tsumoto, Kohei Article ISI CELLULAR MICROBIOLOGY (2010)
Specific Behavior of Intracellular Streptococcus pyogenes That Has Undergone Autophagic Degradation Is Associated with Bacterial Streptolysin O and Host Small G Proteins Rab5 and Rab7 Sakurai, Atsuo; Maruyama, Fumito; Funao, Junko; Okahashi, Nobuo; Shintani, Seikou Article ISI JOURNAL OF BIOLOGICAL CHEMISTRY (2010)
The dawning era of comprehensive transcriptome analysis in cellular microbiology Maruyama, Fumito Article ISI FRONTIERS IN MICROBIOLOGY (2010)
VITCOMIC: visualization tool for taxonomic compositions of microbial communities based on 16S rRNA gene sequences Maruyama, Fumito Article ISI BMC BIOINFORMATICS (2010)


Elucidation of environmental adaptation mechanism of non-tuberculous mycobacterium by multi-genomic analyses and establishment basis for procedure against the infectious diesease Maruyama, Fumito Proyecto (2020)
Roles of gene interaction and epigenome in evolution of Mycobacterium avium Maruyama, Fumito Proyecto (2019)
Distribution of opportunistic pathogen in the built environment Maruyama, Fumito Proyecto (2018)
Development of Harmful Algal Bloom Monitoring Methods and Forecast System for Sustainable Aquaculture and Coastal Fisheries in Chile Maruyama, Fumito Proyecto (2017)
Keeping microbial safety of drinking water all over the world Maruyama, Fumito Proyecto (2016)
Phylogenetic adaptation of Group A Streptococci revealed by genome-wide associate study and epigenetic analysis Maruyama, Fumito Proyecto (2016)
Construction of novel DNA memory devise based on CRISPR Maruyama, Fumito Proyecto (2015)
Genetic network analysis based on transcriptome of invading bacteria and host cell Maruyama, Fumito Proyecto (2013)
Reconstruction and regulation of bacterial community aging and memories Maruyama, Fumito Proyecto (2013)
Spatiotemporal analyses of new virulence acquisition in group A streptococci via host parasitism Maruyama, Fumito Proyecto (2012)
Maintenance mechanism of bacterial community structure by high resolution analysis Maruyama, Fumito Proyecto (2010)


Current opinion and perspectives on the methods for tracking and monitoring plant growth-promoting bacteria Acuna, JJ; Nannipieri, P Review ISI SCOPUS SOIL BIOLOGY & BIOCHEMISTRY (2019)