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Danilo Rodrigo Pérez Pantoja

Investigador

UNIVERSIDAD TECNOLÓGICA METROPOLITANA

Santiago, Chile

Líneas de Investigación


-Genómica Microbiana -Biodegradación -Metagenómica -Ingeniería Metabólica

Educación

  •  Molecular Genetics and Microbiology, PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE. Chile, 2009
  •  Biochemistry, UNIVERSIDAD DE CHILE. Chile, 1998
  •  Bioinformatics and Computational Biology, UNIVERSIDAD COMPLUTENSE DE MADRID. España, 2012
  •  Biochemist, UNIVERSIDAD DE CHILE. Chile, 2002

Experiencia Académica

  •   Profesor Asistente Full Time

    UNIVERSIDAD DE CONCEPCION

    Ciencias Biológicas

    Concepción, Chile

    2015 - 2017

  •   Investigador Full Time

    UNIVERSIDAD TECNOLOGICA METROPOLITANA

    Santiago, Chile

    2017 - A la fecha

  •   Investigador Postdoctoral Full Time

    Centro Nacional de Biotecnología - CSIC

    Madrid, España

    2011 - 2015

Premios y Distinciones

  •   Premio Medalla de Honor Hermann Niemeyer

    SOCIEDAD DE BIOQUIMICA DE CHILE

    Chile, 2004

    Premio al mejor estudiante de los programas de Doctorado en Bioquímica y Biología Molecular


 

Article (34)

Methylotrophs and Hydrocarbon-Degrading Bacteria Are Key Players in the Microbial Community of an Abandoned Century-Old Oil Exploration Well
The faulty SOS response of Pseudomonas putida KT2440 stems from an inefficient RecA-LexA interplay
Transcriptional control of 2,4-dinitrotoluene degradation in Burkholderia sp. R34 bears a regulatory patch that eases pathway evolution
Complete Genome Sequence of Rhodococcus ruber R1, a Novel Strain Showing a Broad Catabolic Potential toward Lignin-Derived Aromatics
Draft Genome Sequences of Two Pseudomonas Strains That Are Able To Use Furan Derivatives as Their Sole Carbon Source
Novel Genes Involved in Resistance to Both Ultraviolet Radiation and Perchlorate From the Metagenomes of Hypersaline Environments
Evolving metabolism of 2,4-dinitrotoluene triggers SOS-independent diversification of host cells
Diurnal Changes in Active Carbon and Nitrogen Pathways Along the Temperature Gradient in Porcelana Hot Spring Microbial Mat
Draft genome sequences of Cylindrospermopsis raciborskii strains CS-508 and MVCC14, isolated from freshwater bloom events in Australia and Uruguay
The interplay of EIIANtr with C-source regulation of the Pu promoter of Pseudomonas putida mt-2
The Metabolic Redox Regime of Pseudomonas putida Tunes Its Evolvability toward Novel Xenobiotic Substrates
Cupriavidus pinatubonensis AEO106 deals with copper-induced oxidative stress before engaging in biodegradation of the herbicide 4-chloro-2-methylphenoxyacetic acid
Genomic features of "Candidatus Venteria ishoeyi", a new sulfur-oxidizing macrobacterium from the Humboldt Sulfuretum off Chile
Plasmid and clonal interference during post horizontal gene transfer evolution
DNA damage elicits a different SOS response in Pseudomonas putida and Escherichia coli
High-resolution analysis of the m -xylene/toluene biodegradation subtranscriptome of P seudomonas putida mt-2
Pyridine nucleotide transhydrogenases enable redox balance of Pseudomonas putida during biodegradation of aromatic compounds.
Hierarchy of Carbon Source Utilization in Soil Bacteria: Hegemonic Preference for Benzoate in Complex Aromatic Compound Mixtures Degraded by Cupriavidus pinatubonensis Strain JMP134
Pseudomonas putida mt-2 tolerates reactive oxygen species generated during matric stress by inducing a major oxidative defense response
The differential response of the Pben promoter of Pseudomonas putida mt-2 to BenR and XylS prevents metabolic conflicts in m-xylene biodegradation
A second chromosomal copy of the catA gene endows Pseudomonas putidamt-2 with an enzymatic safety valve for excess of catechol
Endogenous Stress Caused by Faulty Oxidation Reactions Fosters Evolution of 2,4-Dinitrotoluene-Degrading Bacteria
The Entner-Doudoroff pathway empowers Pseudomonas putida KT2440 with a high tolerance to oxidative stress
Why are chlorinated pollutants so difficult to degrade aerobically? Redox stress limits 1,3-dichloprop-1-ene metabolism by Pseudomonas pavonaceae
Aromatic compounds degradation plays a role in colonization of Arabidopsis thaliana and Acacia caven by Cupriavidus pinatubonensis JMP134
Strict and direct transcriptional repression of the pobA gene by benzoate avoids 4-hydroxybenzoate degradation in the pollutant degrader bacterium Cupriavidus necator JMP134
Modified 3-Oxoadipate Pathway for the Biodegradation of Methylaromatics in Pseudomonas reinekei MT1
The Complete Multipartite Genome Sequence of Cupriavidus necator JMP134, a Versatile Pollutant Degrader
Genuine genetic redundancy in maleylacetate-reductase-encoding genes involved in degradation of haloaromatic compounds by Cupriavidus necator JMP134
Genetic organization of the catabolic plasmid pJP4 from Ralstonia eutropha JMP134 (pJP4) reveals mechanisms of adaptation to chloroaromatic pollutants and evolution of specialized chloroaromatic degradation pathways
Efficient turnover of chlorocatechols is essential for growth of Ralstonia eutropha JMP134(pJP4) in 3-chlorobenzoic acid
Importance of different tfd genes for degradation of chloroaromatics by Ralstonia eutropha JMP134
Novel insights into the interplay between peripheral reactions encoded by xyl genes and the chlorocatechol pathway encoded by tfd genes for the degradation of chlorobenzoates by Ralstonia eutropha JMP134
Role of tfdC(I)D(I)E(I)F(I) and tfdD(II)C(II)E(II)F(II) gene modules in catabolism of 3-chlorobenzoate by Ralstonia eutropha JMP134(pJP4)

Abstract (1)

Genome sequencing and characterization of novel proteobacterial strains having the ability to use furan aldehydes as only carbon source

BookSection (4)

Prokaryotic Metatranscriptomics
Aerobic Degradation of Aromatic Hydrocarbons
Aerobic Degradation of Chloroaromatics
Phylogenomics of Aerobic Bacterial Degradation of Aromatics

EditorialMaterial (1)

Decoding the genetic networks of environmental bacteria: regulatory moonlighting of the TOL system of Pseudomonas putida mt-2

Proyecto (10)

Towards more robust Escherichia coli strains for lignocellulosic biomass conversion by metabolic engineering involving transfer of the biodetoxification potential evolved by microbial communities from pulp-mill waste sludge
Genomics and Applied Microbiology for Biodegradation and Bioproducts (GAMBIO)
METAGENOMIC EXPLORATION OF HARSH ENVIRONMENTS FOR INCREASING TOLERANCE TO LIGNOCELLULOSE-DERIVED INHIBITORS IN E. COLI
ST-Flow - Standardization and Orthogonalization of the Gene Expression Flow for Robust Engineering of NTN (new-to-nature) Biological Properties
PROACTIVE - Programmed acceleration of evolution of the biodegradative gene inventory
BACSIN - Bacterial abiotic celular stress and survival improvement network
Desarrollo y Reprogramación de Sistemas Microbianos
EXPRESION DE GENES MICROBIANOS INVOLUCRADOS EN EL CATABOLISMO DE COMPUESTOS AROMATICOS, LIGNINA Y HEMICELULOSAS, A NIVEL DE LABORATORIO Y EN EL AMBIENTE
UN MODELO PARA CONOCER LAS BASES MOLECULARES DE LA ADAPTACION DE BACTERIAS AEROBICAS A LA DEGRADACION DE CONTAMINANTES CLOROAROMATICOS=> EXPRESION DE OPERONES CATABOLICOS DE RALSTONIA EUTROPHA
MEJORAMIENTO DE LA CAPACIDAD DE BACTERIAS PARA DEGRADAR CONTAMINANTES CLOROFENOLITICOS MEDIANTE PRESION SELECTIVA Y TRANSFERENCIA DE GENES CATABOLICOS Y EVALUACION DE SU ACTIVIDAD EN MICROCOSMOS DE TRATAMIENTO DE EFLUENTES INDUS

Review (2)

Genomic analysis of the potential for aromatic compounds biodegradation in Burkholderiales
Metabolic reconstruction of aromatic compounds degradation from the genome of the amazing pollutant-degrading bacterium Cupriavidus necator JMP134
43
Danilo Pérez

Investigador

Programa Institucional de Fomento a la Investigación, Desarrollo e Innovación

UNIVERSIDAD TECNOLÓGICA METROPOLITANA

Santiago, Chile

21
Bernardo González

Full Professor

UNIVERSIDAD ADOLFO IBAÑEZ

Santiago, Chile

8
Raúl Donoso

Investigador postdoctoral

PIDi

Universidad Tecnológica Metropolitana

Santiago, Chile

7
Thomas Ledger

Associate Professor

UNIVERSIDAD ADOLFO IBÁÑEZ

Santiago, Chile

2
Carlos Farkas

PostDoctoral Fellow

CancerCare Manitoba

University of Manitoba

Winnipeg, Canada

2
Luz Vásquez

Profesor Asociado

Genética Molecular y Microbiología

Pontificia Universidad Católica de Chile

Santiago, Chile

2
Rodrigo De la Iglesia

Profesor Asociado

Genética Molecular y Microbiología

PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE

Santiago, Chile

2
Michael Seeger

Full Professor

Chemistry

UNIVERSIDAD TÉCNICA FEDERICO SANTA MARÍA

Valparaíso, Chile

2
Marlene Manzano

Coordinador de Investigacion

Universidad Mayor

Santiago, Chile

1
Loreine Agullo

INVESTIGADOR POSDTOCTORAL

FACULTAD DE CIENCIAS

PONTIFICIA UNIVERSIDAD CATOLICA DE VALPARAISO

VALPARAISO, Chile

1
Roberto Durán

Asistente Científico

Química

Universidad Técnica Federico Santa María

Valparaíso, Chile

1
Cedric Little

Associated Professor and Director of Research Centre

Engineering and Sciences

Universidad Adolfo Ibáñez

Viña del Mar, Chile

1
Beatriz Diez

PROFESOR ASOCIADO

GENÉTICA MOLECULAR Y MICROBIOLOGIA

PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE

Santiago, Chile

1
Katia Soto

Académica

Universidad de Chile

Santiago, Chile

1
Ana Zúñiga

postdoctoral research fellow

Centre de Biologie Structurale

Montpellier, Francia

1
Lucy Belmar

Profesor asistente adjunto

Facultad de Ciencias de la Vida

Universidad Andrés Bello

Santiago, Chile

1
Daniel Garrido

Associate Professor

Chemical and Bioprocess Engineering

Pontificia Universidad Católica de Chile

Santiago, Chile

1
Nicole Trefault

Profesor Asociado

Centro GEMA- Genómica, Ecología y Medio Ambiente

UNIVERSIDAD MAYOR

Santiago, Chile

1
Alexis Salas

Assistant Professor

Pharmacology

UNIVERSIDAD DE CONCEPCIÓN

Concepción, Chile

1
Leda Guzman

Profesor Adjunto

Instituto de Química

Pontificia Universidad Católica de Valparaíso

Valparaíso, Chile