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Jose Manuel Yañez Lopez

Profesor Asistente

UNIVERSIDAD DE CHILE

Santiago, Chile

Líneas de Investigación


Genética y Genómica Acuícola (GWAS, Genomic prediction, RNA-Seq); Bioinformática ; Estadística para las Ciencias Animales

Educación

  •  Medicina Veterinaria, UNIVERSIDAD DE CHILE. Chile, 2005
  •  Doctorado en Ciencias Silvoagropecuarias y Veterinarias, UNIVERSIDAD DE CHILE. Chile, 2011
  •  Médico Veterinario, UNIVERSIDAD DE CHILE. Chile, 2006

Experiencia Académica

  •   Profesor Asistente Full Time

    UNIVERSIDAD DE CHILE

    Facultad de Ciencias Veterinarias y Pecuarias

    Santiago, Chile

    2014 - 2017

  •   Profesor Asociado Full Time

    UNIVERSIDAD DE CHILE

    Facultad de Ciencias Veterinarias y Pecuarias

    Santiago, Chile

    2017 - A la fecha

Experiencia Profesional

  •   R&D Lab Manager

    Consorcio Biotecnológico Aquainnovo

    Chile

    2011 - 2013

  •   Profesor Asistente - Jornada Completa

    Facultad de Ciencias Veterinarias y Pecuarias, Universidad de Chile

    Chile

    2014 - A la fecha

  •   Profesor Asociado Full Time

    Universidad de Chile

    santiago, Chile

    2017 - A la fecha


 

Article (56)

Comparison of mortality and viral load in rainbow trout (Oncorhynchus mykiss) infected with infectious pancreatic necrosis virus (IPNV) genogroups 1 and 5
Accuracy of genomic predictions using different imputation error rates in aquaculture breeding programs: A simulation study
Advances in genetic improvement for salmon and trout aquaculture: the Chilean situation and prospects
Comparative Genomic Analysis of Three Salmonid Species Identifies Functional Candidate Genes Involved in Resistance to the Intracellular Bacterium Piscirickettsia salmonis
Comparing genomic signatures of domestication in two Atlantic salmon (Salmo salar L.) populations with different geographical origins
Discovery and Functional Annotation of Quantitative Trait Loci Affecting Resistance to Sea Lice in Atlantic Salmon
Fine Mapping Using Whole-Genome Sequencing Confirms Anti-Mullerian Hormone as a Major Gene for Sex Determination in Farmed Nile Tilapia (Oreochromis niloticus L.)
Genetic (co)variation in skin pigmentation patterns and growth in rainbow trout
Genetic parameters for Piscirickettsia salmonis resistance, sea lice (Caligus rogercresseyi) susceptibility and harvest weight in rainbow trout (Oncorhynchus mykiss)
Genome-Wide Association Analysis for Resistance to Infectious Pancreatic Necrosis Virus Identifies Candidate Genes Involved in Viral Replication and Immune Response in Rainbow Trout (Oncorhynchus mykiss)
Genome-Wide Association Study and Cost-Efficient Genomic Predictions for Growth and Fillet Yield in Nile Tilapia (Oreochromis niloticus)
Novel insights into the genetic relationship between growth and disease resistance in an aquaculture strain of Coho salmon (Oncorhynchus kisutch)
Single-step genomic evaluation improves accuracy of breeding value predictions for resistance to infectious pancreatic necrosis virus in rainbow trout
Whole Genome Linkage Disequilibrium and Effective Population Size in a Coho Salmon (Oncorhynchus kisutch) Breeding Population Using a High-Density SNP Array
Accuracy of genotype imputation and genomic predictions in a two-generation farmed Atlantic salmon population using high-density and low-density SNP panels
Determination of the Genetic Component of Fur-Chewing in Chinchillas () and Its Economic Impact.
Gene Expression Response to Sea Lice in Atlantic Salmon Skin: RNA Sequencing Comparison Between Resistant and Susceptible Animals
Genomic Prediction Accuracy for Resistance Against Piscirickettsia salmonis in Farmed Rainbow Trout
Genomic Predictions and Genome-Wide Association Study of Resistance Against Piscirickettsia salmonis in Coho Salmon (Oncorhynchus kisutch) Using ddRAD Sequencing
Mate selection allows changing the genetic variability of the progeny while optimizing genetic response and controlling inbreeding
Population Genomic Structure and Genome-Wide Linkage Disequilibrium in Farmed Atlantic Salmon (Salmo salar L.) Using Dense SNP Genotypes
The relationship between working horse welfare state and their owners empathy level and perception of equine pain
Bayesian genome-wide association analysis for body weight in farmed Atlantic salmon (Salmo salar L.)
Correlated response of flesh color to selection for harvest weight in coho salmon (Oncorhynchus kisutch)
Functional Annotation of All Salmonid Genomes (FAASG)=> an international initiative supporting future salmonid research, conservation and aquaculture.
Genomic predictions can accelerate selection for resistance against Piscirickettsia salmonis in Atlantic salmon (Salmo salar)
Genomic predictions can accelerate selection for resistance against Piscirickettsia salmonis in Atlantic salmon (Salmo salar).
Mate selection in aquaculture breeding using differential evolution algorithm
Resistance against infectious pancreatic necrosis exhibits significant genetic variation and is not genetically correlated with harvest weight in rainbow trout (Oncorhynchus mykiss)
The use of genomic information increases the accuracy of breeding value predictions for sea louse (Caligus rogercresseyi) resistance in Atlantic salmon (Salmo salar)
Assessment of genetic variation for pathogen-specific mastitis resistance in Valle del Belice dairy sheep
Characterization of Antimicrobial Susceptibility and Its Association with Virulence Genes Related to Adherence, Invasion, and Cytotoxicity in Campylobacter jejuni and Campylobacter coli Isolates from Animals, Meat, and Humans
Evaluation of the growth and carcass quality of diallel crosses of four strains of Nile tilapia (Oerochromis niloticus)
Evidence of recent signatures of selection during domestication in an Atlantic salmon population
Genome wide association study for resistance to Caligus rogercresseyi in Atlantic salmon (Salmo salar L.) using a 50K SNP genotyping array
Genomewide single nucleotide polymorphism discovery in Atlantic salmon (Salmo salar): validation in wild and farmed American and European populations
Level of agreement in the recognition of pain among equine practitioners in Chile
Negative genetic correlation between resistance against Piscirickettsia salmonis and harvest weight in coho salmon (Oncorhynchus kisutch)
Applications in the search for genomic selection signatures in fish.
Effect of triploidy in the expression of immune-related genes in coho salmon Oncorhynchus kisutch (Walbaum) infected with Piscirickettsia salmonis
From the viral perspective: Infectious salmon anemia virus (ISAV) transcriptome during the infective process in Atlantic salmon (Salmo salar)
Genome-wide association analysis reveals loci associated with resistance against Piscirickettsia salmonis in two Atlantic salmon (Salmo salar L.) chromosomes
Genome-Wide Association Study (GWAS) for Growth Rate and Age at Sexual Maturation in Atlantic Salmon (Salmo salar)
Genomics in aquaculture to better understand species biology and accelerate genetic progress
High-throughput transcriptome analysis of ISAV-infected Atlantic salmon Salmo salar unravels divergent immune responses associated to head-kidney, liver and gills tissues
Applications in the search for genomic selection signatures in fish
Characterization of Mycobacterium salmoniphilum as causal agent of mycobacteriosis in Atlantic salmon, Salmo salar L., from a freshwater recirculation system
Genetic co-variation between resistance against both Caligus rogercresseyi and Piscirickettsia salmonis, and body weight in Atlantic salmon (Salmo salar)
Genetics and genomics of disease resistance in salmonid species
Inbreeding and effective population size in a coho salmon (Oncorhynchus kisutch) breeding nucleus in Chile
Assessing footprints of selection in commercial Atlantic salmon populations using microsatellite data
Quantitative genetic variation of resistance against Piscirickettsia salmonis in Atlantic salmon (Salmo salar)
Genetic factors involved in resistance to infectious diseases in salmonids and their application in breeding programmes Factores genéticos que inciden en la resistencia a enfermedades infecciosas en salmónidos y su aplicación en programas de mejoramiento
Characterization of new microsatellite markers derived from sequence databases for the emu (Dromaius novaehollandiae)
The CK1 gene family: expression patterning in zebrafish development
Correlated response of flesh color to selection for harvest weight in coho salmon (Oncorhynchus kisutch)

Abstract (8)

BIO-ECONOMIC MODELING: A KEY TOOL TO EVALUATE THE BENEFITS OF GENOMIC SELECTION IN ATLANTIC SALMON
BREEDING PROGRAMS IN FISH AQUACULTURE: HISTORICAL CONTEXT AND PERSPECTIVES
CORRELATED RESPONSE IN COLOR FLESH AFTER SIX GENERATION OF SELECTION FOR HARVEST WEIGHT IN COHO SALMON, (Oncorhynchus kisutch)
EXTENT OF GENOME-WIDE LINKAGE DISEQUILIBRIUM IN FARMED ATLANTIC SALMON (Salmo salar L.) USING HIGHDENSITY GENOTYPES
GENETIC PARAMETERS FOR RESISTANCE TO Caligus rogercresseyi, Piscirickettsia salmonis AND BODY WEIGHT IN RAINBOW TROUT (Oncorhynchus mykiss)
GENOME WIDE ASSOCIATION ANALYSIS FOR RESISTANCE TO Caligus rogercresseyi IN ATLANTIC SALMON (Salmo salar L.)
GENOME WIDE ASSOCIATION ANALYSIS REVEALS GENETIC ARCHITECTURE OF THE RESISTANCE TO Piscirickettsia Salmonis IN ATLANTIC SALMON (Salmo salar L.)
IDENTIFYING PARALLEL AND NON-PARALLEL GENOMIC CHANGES BETWEEN INDEPENDENT PAIRS OF WILD/DOMESTIC ATLANTIC SALMON POPULATIONS USING A HIGH DENSITY SNP ARRAY

Editorial (1)

Genomics in aquaculture to better understand species biology and accelerate genetic progress

Proyecto (9)

Low-cost genome-wide association study and genomic predictions for resistance to Aeromonas hydrophila in pacu (Piaractus mesopotamicus). FAPESP-CONICYT
Identification of the quantitative genetic basis and genomic architecture for growth under chronic heat stress in rainbow trout=> Getting ready for climate change
Utilising functional genomic variation for improved disease resistance in Chilean salmon aquaculture
Development of an integrative strategy for the genetic improvement of the resistance against Salmon Rickettsial Syndrome (Piscirickettsia salmonis) in salmonid species using molecular information
Enhancing Production In Coho=> Culture, Community, Catch (EPIC4).
Development of a biotechnological platform for exporting genetic services to improve warm water aquaculture species production in America applying genomic selection
Development of a SNP chip for the genetic improvement of disease resistance in Atlantic salmon
Development and implementation of genomic selection schemes in salmonid species in Chile
Utilización de la genómica funcional para el mejoramiento de la resistencia genética a la enfermedad de la necrosis pancreática infecciosa (IPN) y Pisciricketsiosis en salmónidos

Review (2)

Genetics and genomics of disease resistance in salmonid species
Genetic factors involved in resistance to infectious diseases in salmonids and their application in breeding programmes
59
Jose Yañez

Profesor Asistente

UNIVERSIDAD DE CHILE

Santiago, Chile

6
Katharina Correa

Asistente

Desarrollo Genético

Aquainnovo

Puerto Montt, Chile

5
Alejandro Maass

Director

Center for Mathematical Modeling

Universidad de Chile

Santiago, Chile

4
ANA JEDLICKI

Lab Manager

Medicina Preventiva

Universidad de Chile

Santiago, Chile

4
Victor Martinez

PROFESRO ASOCIADO

DPTO. FOMENTO DE LA PRODUCCION ANIMAL

UNIVERSIDAD DE CHILE

Santiago, Chile

4
Liane Ney

Profesor asistente

Producción animal

Universidad Andrés Bello

santiago, Chile

4
Maria López

Postdoc

Department of Animal Breeding and Genetics

Swedish University of Agricultural Sciences

Uppsala, Suecia

3
Cristian Gallardo

Profesor Asociado

Departamento de Oceanografía

Universidad de Concepción

Concepcion, Chile

3
Alex Di Genova

Assistant professor

Engineering sciences

Universidad de O'Higgins

Rancagua, Chile

1
Amelina Albornoz

Post doctorado

Virología Molecular

Fundación Ciencia & Vida

Santiago, Chile

1
Ariel Reyes

Director de Departamento

Ciencias Biológicas

UNIVERSIDAD ANDRÉS BELLO

Santiago, Chile

1
lisette lapierre

PROFESOR ASISTENTE

MEDICINA PREVENTIVA

UNIVERSIDAD DE CHILE

Santiago, Chile

1
David Tapia

Asistente de investigación

Departamento de Medicina Preventiva

Universidad de Chile

La Pintana, Chile

1
Leonardo Sáenz

Profesor Asociado

Ciencias Biológicas Animales

UNIVERSIDAD DE CHILE, FACULTAD DE CIENCIAS VETERINARIAS Y PECUARIAS

Santiago, Chile

1
roberto vidal

Head of Pathogenic Escherichia coli Laboratory

Director Microbiology and Mycology Program

UNIVERSIDAD DE CHILE

Santiago, Chile

1
Phillip Dettleff

Académico Disciplinar

Facultad de Medicina Veterinaria y Agronomia, Universidad de las Americas

Santiago, Chile

1
Felipe Reyes

Associate profesor - Head of UAB Fish transcriptomics platform

Universitat Autònoma de Barcelona

Barcelona, España

1
Sebastian Boltana

Profesor Asociado

Occeanografia

Universidad de Concepcion

Concpecion, Chile

1
JOSE SANTOS

Full Professor

Department of Nutrition, Diabetes and Metabolism

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Santiago, Chile

1
Rodrigo Pulgar

Profesor/Investigador asistente

INTA

UNIVERSIDAD DE CHILE - INSTITUTO DE NUTRICION Y TECNOLOGIA DE ALIMENTOS

Santiago, Chile

1
Claudia Foerster

Assistant Professor

Institute of Agri-food, Animal and Environmental Sciences

Universidad de O'Higgins

San Fernando, Chile

1
Ruben Vidal

Profesor Asociado

Biologia

UNIVERSIDAD DE SANTIAGO DE CHILE

Santiago, Chile

1
pamela araya

JEFE DE SECCIÓN

BIOMEDICO

INSTITUTO DE SALUD PUBLICA DE CHILE

SANTIAGO, Chile

1
Mauricio Moraga

Profesor Asociado

Programa de Genética Humana

FACULTAD DE MEDICINA, UNIVERSIDAD DE CHILE

SANTIAGO, Chile

1
Verónica Burzio

Investigadora Asociada

Fundacion Ciencia y Vida

Santiago, Chile