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Sebastian Nelson Mendoza Farías

Investigador

Centro De Modelamiento Matemático

santiago, Chile

optimización de bioprocesos, aprendizaje profundo, aprendizaje de máquinas, biologia de sistemas, modelos metabolicos a escala genómica, modelación basada en restricciones, fermentaciones, desarrollo de algoritmos bioinformaticos.

Biotecnología, PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE. Chile, 2014
Ciencias de la Ingeniería, PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE. Chile, 2014
Biotechnology, VRIJE UNIVERSITEIT. Holanda, 2024

Ingeniero Coordinador de Proyecto FONDEF D11I1139 Full Time

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Ingenieria

Santiago, Chile

2014 - 2016
Ingeniero de Proyecto Full Time

UNIVERSIDAD DE CHILE

Ciencias Físicas y Matemáticas

Santiago, Chile

2016 - 2018
Asesor Part Time

DICTUC S.A

Chile

2011 - 2011
Alumno en Práctica Full Time

FUNDACION FRAUNHOFER CHILE RESEARCH

Santiago, Chile

2012 - 2012
Investigador Full Time

CENTRO DE MODELAMIENTO MATEMÁTICO

ingeniería

Santiago, Chile

2023 - At present

Jefe de operaciones Full Time

STICTA

Santiago, Chile

2021 - 2023
Investigador Full Time

Centro de Modelamiento Matemático

Santiago, Chile

2016 - 2018
Investigador Full Time

Centro de Modelamiento Matemático

Santiago, Chile

2023 - At present

Becas Chile

CONICYT

Chile, 2017

Becas Chile


Metabolic modeling of Halomonas campaniensis improves polyhydroxybutyrate production under nitrogen limitation Mendoza, Sebastian N. Article ISI APPLIED MICROBIOLOGY AND BIOTECHNOLOGY (2024)
Yeast9: a consensus genome-scale metabolic model for S. cerevisiae curated by the community Zhang, CY; Sanchez B.J.; Li, FR; Eiden, CWQ; Scott, WT; Liebal, UW; Blank, LM; Mengers, HG; Anton, M.; Rangel, AT; et al. Article ISI (2024)
Ethanol-lactate transition of<i> Lachancea</i><i> thermotolerans</i> is linked to nitrogen metabolism Battjes, Julius; Melkonian, Chrats; Mendoza, Sebastian N.; Haver, Auke; Al-Nakeeb, Kosai; Koza, Anna; Schrubbers, Lars; Wagner, Marijke; Zeidan, Ahmad A.; Molenaar, Douwe; et al. Article ISI FOOD MICROBIOLOGY (2023)
Metabolic behavior for a mutant Oenococcus oeni strain with high resistance to ethanol to survive under oenological multi-stress conditions Contreras, Angela; Díaz, Gabriela; Mendoza, Sebastian N.; Canto, Mauricio; Agosin, Eduardo Article ISI FRONTIERS IN MICROBIOLOGY (2023)
The pH-dependent lactose metabolism of Lactobacillus delbrueckii subsp. bulgaricus: An integrative view through a mechanistic computational model Bendig, Tamara; Ulmer, Andreas; Luzia, Laura; Mueller, Susanne; Sahle, Sven; Bergmann, Frank T.; Loesch, Maren; Erdemann, Florian; Zeidan, Ahmad A.; Mendoza, Sebastian N.; et al. Article ISI JOURNAL OF BIOTECHNOLOGY (2023)
A Computational Toolbox to Investigate the Metabolic Potential and Resource Allocation in Fission Yeast Grigaitis, Pranas; Grundel, Douwe A. J.; Van Pelt-KleinJan, Eunice; Isaku, Mirushe; Xie, Guixiang; Farias, Sebastian Mendoza; Van Heerden, Johan H. Article ISI MSYSTEMS (2022)
Metabolic Modeling of Wine Fermentation at Genome Scale MENDOZA-FARIAS, SEBASTIAN NELSON; Saa, Pedro A.; Teusink, Bas; AGOSIN-TRUMPER, EDUARDO Article SCOPUS Methods in molecular biology (Clifton, N.J.) (2022)
A Multiphase Multiobjective Dynamic Genome-Scale Model Shows Different Redox Balancing among Yeast Species of the Saccharomyces Genus in Fermentation Henriques, David; Mendoza, Sebastian N.; Macias, Laura G.; Perez-Torrado, Roberto; Barrio, Eladio Article ISI MSYSTEMS (2021)
Genome-scale metabolic models of Microbacterium species isolated from a high altitude desert environment Mandakovic, Dinka; Maldonado, Jonathan; Aïte, Méziane; Saitua, Francisco; Allende, Miguel; Siegel, Anne; Latorre, Mauricio Article ISI SCOPUS SCIENTIFIC REPORTS (2020)
A systematic assessment of current genome-scale metabolic reconstruction tools Mendoza, Sebastian N.; Olivier, Brett G.; Molenaar, Douwe; Teusink, Bas Article ISI GENOME BIOLOGY (2019)
Creation and analysis of biochemical constraint-based models using the COBRA Toolbox v.3.0 Heirendt, L; Arreckx, S; Pfau, T; Richelle, A; Heinken, A; Haraldsdottir, HS; Keating, SM; Vlasov, V; Magnusdottir, S; Ng, C-Y; et al. Article ISI SCOPUS NATURE PROTOCOLS (2019)
Mapping the Physiological Response of Oenococcus oeni to Ethanol Stress Using an Extended Genome- Scale Metabolic Model Contreras, A.; Ribbeck, M; Gutierrez, GD; Agosin, E Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2018)
Traceability, reproducibility and wiki-exploration for a-la-carte reconstructions of genome-scale metabolic models Aite, Meaziane; Chevallier, Marie; Frioux, Cleamence; Trottier, Camille; Got, Jeanne; Paz Cortes, Maria; Mendoza, Sebastian N.; Carrier, Gregory; Dameron, Olivier; Guillaudeux, Nicolas; et al. Article ISI SCOPUS PLOS COMPUTATIONAL BIOLOGY (2018)
Analysis of Piscirickettsia salmonis Metabolism Using Genome-Scale Reconstruction, Modeling, and Testing Mendoza, SN Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2017)
Genome-Scale Reconstruction of the Metabolic Network in Oenococcus oeni to Assess Wine Malolactic Fermentation Sebastián N. Mendoza, Pablo M.Cañón; Angela Contreras, Magdalena Ribbeck Article Frontiers in Microbiology (2017)
Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production Genova, Alex Di; Gajardo, Natalia Article ISI SCOPUS BMC SYSTEMS BIOLOGY (2017)
Oxygen Response of the Wine Yeast Saccharomyces cerevisiae EC1118 Grown under Carbon-Sufficient, Nitrogen-Limited Enological Conditions Orellana M.; Torres, J; Mendoza, S.; Melo F.; Agosin, E Article ISI SCOPUS Applied and Environmental Microbiology (2012)