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Dante Felipe Travisany Flores

Profesor Asociado

Universidad de Las Américas

Santiago, Chile

Líneas de Investigación


System Biology, Bioinformatics, Genomics, Data Science, Complex Systems, Machine Learning.

Educación

  •  Licenciatura en Bioinformática, Universidad de Talca. Chile, 2009
  •  Ingeniero en Bioinformática, Universidad de Talca. Chile, 2010
  •  Ingeniería de Sistemas Complejos, Universidad Adolfo Ibáñez. Chile, 2019

Experiencia Académica

  •   Lecturer Magister Informática Médica Other

    UNIVERSIDAD DE CHILE

    Facultad de Medicina

    Santiago, Chile

    2011 - At present

  •   Lecturer Diplomado Bioinformática Part Time

    UNIVERSIDAD DE CHILE

    Facultad de Ciencias Químicas y Farmacéuticas

    Santiago, Chile

    2019 - 2019

  •   Lecturer Bioinformática Part Time

    UNIVERSIDAD DE CHILE

    Facultad de Ciencias Físicas y Matemáticas

    Santiago, Chile

    2019 - At present

  •   Académico Investigador Full Time

    Universidad de las Américas

    Facultad de Ingeniería y Negocios

    Santiago, Chile

    2021 - At present

Experiencia Profesional

  •   Ingeniero de Proyectos Full Time

    Centro de Modelamiento Matemático

    Santiago, Chile

    2010 - 2019

  •   Scientist Part Time

    Centro de Modelamiento Matemático

    Santiago, Chile

    2019 - 2021

  •   Investigador Postdoctoral Part Time

    Inria Chile

    Santiago, Chile

    2020 - 2021

  •   Académico Full Time

    Universidad de las Américas

    Santiago, Chile

    2021 - At present

  •   Editor Asociado Other

    Frontiers in Biological Modeling and Simulation

    Lausana, Suiza

    2022 - At present

Formación de Capital Humano


Dirección de Tesis de Pregrado:

1. Cayetana Zamorano: Ingeniería Civil Química, Ingeniería Civil en Biotecnología, FCFM, U. Chile, 2022 (co-dirección Irene Martínez Basterrechea).


Difusión y Transferencia


THE PEREZ-GUERRERO TRUST FUND FOR SOUTH-SOUTH COOPERATION G-77: Capacity building on bioinformatics and genomic tools for biodiversity studies in Latin America.

The Center of Technological, Biomedical, and Environmental Research (CITBM) of the San Marcos
National Mayor University (UNMSM), based in Callao, Peru, directly submitted the proposal. A communication notifying the Peruvian focal point for South-South cooperation of the submission was included in the supporting documentation. Other participating countries would be Brazil (through the School of Health and Life Sciences of the Pontifical Catholic University of Rio Grande do Sul, based in Porto Alegre), and Chile (through the Center for Mathematical Modeling of the University of Chile, based in Santiago de Chile).

The main objective of the project is to improve the capacity in bioinformatics research in Latin America with an emphasis on genomic applications to biodiversity by networking and the use of modern training techniques such as a massive open online course (MOOC), composed of webinars and online synchronous and asynchronous lectures that can be reached anywhere in the world. Mathematic, bioinformatics and genomics researchers from the participating countries will be invited to participate as instructors for a first edition of the course attended by a minimum of 30 students. Later, other young researchers from the Spanish and Portuguese speaking countries members of the Group of 77 may also take the course since it will remain available online in an asynchronous manner with videos and all the material produced.



 

Article (26)

Expanding the Toolbox for Genetic Manipulation in <i>Pseudogymnoascus</i>: RNAi-Mediated Silencing and CRISPR/Cas9-Mediated Disruption of a Polyketide Synthase Gene Involved in Red Pigment Production in <i>P. verrucosus</i>

Palma, Diego; Oliva, Vicente; Montanares, Mariana; Gil-Duran, Carlos; Travisany, Dante; Chavez, Renato; Vaca, Inmaculada

Article ISI
JOURNAL OF FUNGI  (2024)

Amerindian ancestry proportion as a risk factor for inflammatory bowel diseases: results from a Latin American Andean cohort

Perez-Jeldres, Tamara; Magne, Fabien; Ascui, Gabriel; Alvares, Danilo; Orellana, Matias; Alvarez-Lobos, Manuel; Hernandez-Rocha, Cristian; Azocar, Lorena; Aguilar, Nataly; Espino, Alberto; Estela, Ricardo; Escobar, Sergio; Zazueta, Alejandra; Baez, Pablo; Silva, Veronica; de la Vega, Andres; Arriagada, Elizabeth; Pavez-Ovalle, Carolina; Diaz-Asencio, Alejandro; Travisany, Dante; Miquel, Juan Francisco; Villablanca, Eduardo J.; Kronenberg, Mitchell; Bustamante, Maria Leonor

Article ISI
FRONTIERS IN MEDICINE  (2023)

Insights into neutralizing antibody responses in individuals exposed to SARS-CoV-2 in Chile

Beltrán-Pavez, Carolina; Riquelme-Barrios, Sebastián; Oyarzún-Arrau, Aarón; Gaete-Argel, Aracelly; González-Stegmaier, Roxana; Cereceda-Solis, Karina; Aguirre, Adam; Travisany, Dante; Palma-Vejares, Ricardo; Barriga, Gonzalo P.; Gaggero, Aldo; Martínez-Valdebenito, Constanza; Corre, Nicole Le; Ferrés, Marcela; Balcells, María Elvira; Fernandez, Jorge; Ramírez, Eugenio; Villarroel, Franz; Valiente-Echeverría, Fernando; Soto-Rifo, Ricardo

Article
SCIENCE ADVANCES  (2021)

Expression of two indole-3-acetic acid (IAA)-amido synthetase (GH3) genes during fruit development of raspberry (Rubus idaeus Heritage)

Bernales, Maricarmen; Monsalve, Liliam; Ayala-Raso, Anibal; Valdenegro, Monika; Martínez, Juan-Pablo; Travisany, Dante; Defilippi, bruno; González-Agüero, Mauricio; Cherian, Sam; Fuentes, Lida

Article ISI SCOPUS
SCIENTIA HORTICULTURAE  (2019)

Generation and robustness of Boolean networks to model Clostridium difficile infection

Travisany, Dante; GOLES, ERIC; "Latorre, Mauricio"; Cortés, María-Paz; Maass, Alejandro

Article SCOPUS
NATURAL COMPUTING  (2019)

RNA-Seq analysis and transcriptome assembly of raspberry fruit (Rubus idaeus "Heritage") revealed several candidate genes involved in fruit development and ripening

Travisany, Dante; Ayala-Raso, Anibal; Di Genova, Alex; Monsalve, Liliam; Bernales, Maricarmen; Martínez, Juan Pablo; González-Agüero, Mauricio; Defilippi, Bruno; Cherian, Sam; Maass, Alejandro; Fuentes, Lida

Article ISI SCOPUS
SCIENTIA HORTICULTURAE  (2019)

Whole Genome Sequence, Variant Discovery and Annotation in Mapuche-Huilliche Native South Americans

Vidal, Elena A; Moyano, Tomas C.; Bustos, Bernabe, I; Perez-Palma, Eduardo; Moraga, Carol; Riveras, Eleodoro; Montecinos, Alejandro; Azocar, Lorena; Soto, Daniela C.; Vidal, Mabel; Di Genoval, Alex; Puschel, Klaus; Nurnberg, Peter; Buch, Stephan; Hampe, Jochen; Allende, Miguel L.; Cambiazo, Veronica; Gonzalez, Mauricio; Hodar, Christian; Montecino, Martin; Munoz-Espinoza, Claudia; Orellana, Ariel; Reyes-Jara, Angelica; Travisanyl, Dante; Vizoso, Paula; Moraga, Mauricio; Eyheramendy, Susana; Maass, Alejandro; De Ferrari, Giancarlo, V; Mique, Juan Francisco; Gutierrez, Rodrigo A.

Article ISI SCOPUS
SCIENTIFIC REPORTS  (2019)

Structure and co-occurrence patterns in microbial communities under acute environmental stress reveal ecological factors fostering resilience

Mandakovic, Dinka; Rojas, Claudia; Maldonado, Jonathan; "Latorre, Mauricio"; Travisany, Dante; Delage, Erwan; Bihouee, Audrey; Jean, Geraldine; Diaz, Francisca P.; Fernandez-Gomez, Beatriz; Cabrera, Pablo; Gaete, Alexis; Latorre, Claudio; Gutierrez, Rodrigo A.; Maass, Alejandro; Cambiazo, Veronica; Navarrete, Sergio A; Eveillard, Damien; Gonzalez, Mauricio

Article ISI SCOPUS
SCIENTIFIC REPORTS  (2018)

The Role of Fur in the Transcriptional and Iron Homeostatic Response of Enterococcus faecalis

Latorre, M; Quenti, D; Travisany, D; Singh, KV; Murray, BE; Maass, A; Cambiazo, V

Article ISI SCOPUS
FRONTIERS IN MICROBIOLOGY  (2018)

Analysis of Piscirickettsia salmonis Metabolism Using Genome-Scale Reconstruction, Modeling, and Testing

Cortes, MP; Mendoza, SN; Travisany, D; Gaete, A; Siegel, A; Cambiazo, V; Maass, A

Article ISI SCOPUS
FRONTIERS IN MICROBIOLOGY  (2017)

Global gene expression analysis provides insight into local adaptation to geothermal streams in tadpoles of the Andean toad Rhinella spinulosa

Pastenes, Luis; Valdivieso, Camilo; Di Genova, Alex; Travisany, Dante; Hart, Andrew; Montecino, Martín; Orellana, Ariel; Gonzalez, Mauricio; Gutiérrez, Rodrigo A.; Allende, Miguel L.; Maass, Alejandro; Méndez, Marco A.

Article ISI SCOPUS
SCIENTIFIC REPORTS  (2017)

Reconstruction of the microalga Nannochloropsis salina genome-scale metabolic model with applications to lipid production

Loira, Nicolás; Mendoza, Sebastian; Paz Cortés, María; Rojas, Natalia; Travisany, Dante; Genova, Alex Di; Gajardo, Natalia; Ehrenfeld, Nicole; Maass, Alejandro

Article ISI SCOPUS
BMC SYSTEMS BIOLOGY  (2017)

A Multi-Serotype Approach Clarifies the Catabolite Control Protein A Regulon in the Major Human Pathogen Group A Streptococcus

DebRoy, Sruti; Saldaña, Miguel; Travisany, Dante; Montano, Andrew; Galloway-Peña, Jessica; Horstmann, Nicola; Yao, Hui; González, Mauricio; Maass, Alejandro; Latorre, Mauricio; Shelburne, Samuel A.

Article ISI SCOPUS
SCIENTIFIC REPORTS  (2016)

Global transcriptional responses of Acidithiobacillus ferrooxidans Wenelen under different sulfide minerals

Latorre, M; Ehrenfeld N.; CORTES, MP; Travisany, D; Budinich, M.; Aravena, A.; Gonzalez, M.; Bobadilla-Fazzini, RA; Parada P.; Maass A.

Article ISI SCOPUS
BIORESOURCE TECHNOLOGY  (2016)

The bioleaching potential of a bacterial consortium

Latorre, M; Cortés MP; Travisany, D; Di Genova, A; Budinich, M.; Reyes-Jara, A; Hödar C; González M; Parada P.; Bobadilla-Fazzini RA; Cambiazo, V; Maass A.

Article ISI SCOPUS
BIORESOURCE TECHNOLOGY  (2016)

The genome sequence of the soft-rot fungus Penicillium purpurogenum reveals a high gene dosage for lignocellulolytic enzymes

Wladimir Mardones, Alex Di Genova ; Maria Paz Cortés, Dante Travisany

Article
Fungal Genetics and Biology  (2016)

Characterization of root transcriptome dynamics in Prunus sp. rootstocks with contrasting response to hypoxia,

Arismendi M, Almada R; Pimentel P, Hinrichsen P; Pinto P, Di Genova A; Travisany D, Maass A

Article
Tree Genetics & Genomes  (2015)

Complete genome sequence of Piscirickettsia salmonis LF-89 (ATCC VR-1361) a major pathogen of farmed salmonid fish

Pulgar, R; Travisany, D; Zuniga, A; Maass A.; Cambiazo, V

Article ISI SCOPUS
Journal of Biotechnology  (2015)

Genome Sequence of Borrelia chilensis VA1, a South American Member of the Lyme Borreliosis Group

Huang, Weihua; Ojaimi, Caroline; Fallon, John T.; Travisany, Dante; Maass, Alejandro; Ivanova, Larisa; Tomova, Alexandra; González-Acuña, Daniel; Godfrey, Henry P.; Cabello, Felipe C.

Article
Genome Announcements  (2015)

Transcriptional response of Atlantic salmon families to Piscirickettsia salmonis infection highlights the relevance of the iron-deprivation defence system

Pulgar, R; Hodar, C; Travisany, D; Zuniga, A; Domínguez C.; Maass A.; Gonzalez, M.; Cambiazo, V

Article ISI SCOPUS
BMC Genomics  (2015)

Transcriptome sequencing of Prunus sp rootstocks roots to identify candidate genes involved in the response to root hypoxia

Arismendi, MJ; Almada, R.; Pimentel, P; Bastías A.; Salvatierra A.; Rojas P.; Hinrichsen, P; Pinto, M; Di Genova, A; Travisany, D; Maass A.; Sagredo, B

Article ISI SCOPUS
Tree Genetics and Genomes  (2015)

A new genome of Acidithiobacillus thiooxidans provides insights into adaptation to a bioleaching environment

Travisany, D; CORTES, MP; Latorre, M; Di Genova, A; Budinich, M.; Bobadilla-Fazzini, RA; Parada P.; Gonzalez, M.; Maass A.

Article ISI SCOPUS
RESEARCH IN MICROBIOLOGY  (2014)

Comparative gene expression analysis of Dtg, a novel target gene of Dpp signaling pathway in the early Drosophila melanogaster embryo

Hodar, C; Zuriiga, A; Pulgar, R; Travisany, D; Chacon, C.; Pino M.; Maass A.; Cambiazo, V

Article ISI
GENE  (2014)

Symbolic Extensions Applied to Multiscale Structure of Genomes

Downarowicz T; Travisany, D; Montecino, M.; Maass A.

Article ISI SCOPUS
ACTA BIOTHEORETICA  (2014)

Whole genome comparison between table and wine grapes reveals a comprehensive catalog of structural variants

Di Genova, A; Almeida AM; Munoz-Espinoza, C; Vizoso P.; Travisany, D; Moraga, C.; Pinto, M; Hinrichsen, P; Orellana, A; Maass A.

Article ISI
BMC PLANT BIOLOGY  (2014)

Draft Genome Sequence of the Sulfobacillus thermosulfidooxidans Cutipay Strain, an Indigenous Bacterium Isolated from a Naturally Extreme Mining Environment in Northern Chile

Travisany, D; Di Genova, A; Sepúlveda, A.; Bobadilla Fazzini R.A.; Parada P.; Maass A.

Article ISI SCOPUS
Journal of Bacteriology  (2012)

Proyecto (5)

Communication and Information Research and Innovation Center - CIRIC - INRIA

INNOVA - CORFO

Proyecto
2012-2020
Investigador(a)

Centro de Regulación del Genoma

FONDAP (15090007)

Proyecto
2010-2020
Investigador(a)

TRANSCRIPTOMIC AND GENETIC ENGINEERING STUDIES IN LIPID ACCUMULATING MICROALGAE NANNOCHLOROPSIS OCULATA

FONDECYT (11090234)

Proyecto
2010-2013
Investigador(a)

IDENTIFICATION OF GENES RELATED TO BERRY DEVELOPMENT AND GROWTH IN SEEDLESS TABLE GRAPES BY MEANS OF FUNCTIONAL GENOMICS

FONDECYT (G07I1002)

Proyecto
2007-2012
Investigador(a)

INFORMATION BIOMINING LABORATORY=> ORGANIZATION AND STATISTICAL PROCESSING OF BIO-MINING DATA, GENOME ANNOTATION AND PLATFORM DEVELOPMENT, BIOSIGMA

INNOVA-CORFO

Proyecto
2003-2010
Investigador(a)

24
Dante Travisany

Profesor Asociado

Facultad de Ingeniería y Negocios

Universidad de Las Américas

Santiago, Chile

15
Alejandro Maass

Main Researcher

Center for Mathematical Modeling

Universidad de Chile

Santiago, Chile

9
Alex Di Genova

Associate professor

Engineering sciences

Universidad de O'Higgins

Rancagua, Chile

8
Veronica Cambiazo

Profesora titular

Unidad de Nutrición Básica

UNIVERSIDAD DE CHILE - INTA

Santiago, Chile

6
Mauricio Gonzalez

Profesor Titular

INTA

UNIVERSIDAD DE CHILE - INSTITUTO DE NUTRICION Y TECNOLOGIA DE ALIMENTOS

Santiago, Chile

4
Christian Hodar

ASSISTANT PROFESSOR

BIOINFORMATICS & GENEXPRESSION LAB - INTA

UNIVERSIDAD DE CHILE

Santiago, Chile

4
Pilar Parada

Directora

Facultad de Ciencias de la Vida

Universidad Andrés Bello

Santiago, Chile

3
Maria Cortés

Ingeniero de proyectos

Universidad de Chile

Santiago, Chile

3
Ariel Orellana

Profesor Titular

Centro de Biotecnologia Vegetal

UNIVERSIDAD ANDRES BELLO

Santiago, Chile

3
Mauricio Latorre

Profesor Asociado

INGENIERIA

UNIVERSIDAD DE O'HIGGINS

Rancagua, Chile

3
Rodrigo Pulgar

Profesor/Investigador asistente

INTA

UNIVERSIDAD DE CHILE - INSTITUTO DE NUTRICION Y TECNOLOGIA DE ALIMENTOS

Santiago, Chile

2
Claudia Muñoz

Investigadora

Biotecnología

Instituto de Investigaciones Agropecuarias INIA-La Platina

Santiago, Chile

2
Manuel Pinto

ACADÉMICO

INSTITUTO DE CIENCIAS AGRONOMICAS Y VETERINARIAS

Universidad de O'Higgins

San Fernando, Chile

2
Martín Montecino

Director

Institute of Biomedical Sciences

UNIVERSIDAD ANDRES BELLO

Santiago, Chile

2
Angelica Reyes

Profesor Asociado

INTA UNIVERSIDAD DE CHILE

Santiago, Chile

2
Patricio Hinrichsen

Investigador

INIA CENTRO REGIONAL LA PLATINA

Santiago, Chile

2
Juan-Pablo Martinez

Investigador

INSTITUTO DE INVESTIGACIONES AGROPECUARIAS

Rengo, Chile

2
Alexis Gaete

Postdoctorado

Instituto de Nutrición y Tecnmología de los Alimentos (INTA)

Universidad de Chile

Santiago, Chile

2
Carol Moraga

Assistant professor

Instituto Ciencias de la Ingeniería

Universidad de O'Higgins

Rancagua, Chile

2
Sebastian Mendoza

Jefe de operaciones

STICTA

santiago, Chile

2
Miguel Allende

Director

Biología

FACULTAD DE CIENCIAS, UNIVERSIDAD DE CHILE

Santiago, Chile

2
Lida Fuentes

Researcher

Centro Regional de Estudios en Alimentos Saludables

Valparaiso, Chile

1
Nicolas Loira

CTO AlicantoLabs

Escuela de Negocios

Universidad Adolfo Ibáñez

Santiago, Chile

1
Mauricio Moraga

Profesor Asociado

Programa de Genética Humana

FACULTAD DE MEDICINA, UNIVERSIDAD DE CHILE

SANTIAGO, Chile

1
Klaus Puschel

Full Professor

Family Medicine

FACULTAD MEDICINA PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Santiago, Chile

1
Elena Vidal

Directora Programas de Doctorado

Centro de Genomica y Bioinformatica

Universidad Mayor de Chile

Santiago, Chile

1
Susana Eyheramendy

Full Professor

Universidad Adolfo Ibánez

Santiago, Chile

1
Sergio Navarrete

Full Profesor

Ecología

Pontificia Universidad Católica de Chile

Las CRuces, Chile

1
Claudio Latorre

Full Professor

Ecology

Pontificia Universidad Católica de Chile

Santiago, Chile

1
JONATHAN MALDONADO

Postdoc CONICYT

Dpto. Genética Molecular y Microbiología

Pontificia Universidad Católica de Chile

Santiago, Chile

1
DINKA MANDAKOVIC

Assistant Professor

GEMA Center

Universidad Mayor

Santiago, Chile

1
Eric Goles

Full Professor

Facultad de Ingeniería y Ciencias

Universidad Adolfo Ibáñez

Santiago, Chile

1
PAULA VIZOSO

Researcher

Universidad Mayor

SANTIAGO, Chile

1
Claudia Rojas

Associate professor

Instituto de Ciencias Agroalimentarias, Animales y Amientalesas y Veterinarias

Universidad de O'Higgins

San Fernando, Chile

1
Pamela Rojas

Doctora en Ciencias, Coordinadora Científica

Vicerrectoría de Investigación y Doctorado

Universidad Autónoma de Chile

Santiago, Chile

1
Rodrigo Gutierrez

Full Professor

Molecular Genetics & Microbiology

PONTIFICIA UNIVERSIDAD CATÓLICA DE CHILE

Santiago, Chile

1
Monika Valdenegro

Full professor

Faculty of Agri-Food Sciences,

Pontificia Universidad Católica de Valparaíso

Valparaíso, Chile

1
Mabel Vidal

Academic

Computer Science

Universidad de Concepción

Concepcion, Chile

1
Ariel Salvatierra

Investigador

Genómica Vegetal

Centro de Estudios Avanzados en Fruticultura

Rengo, Chile

1
Paula Pimentel

Coordinator of Plant Stress Physiology laboratory

Centro de Estudios Avanzados en Fruticultura

Rengo, Chile

1
Eduardo Pérez

Profesor Investigador Asociado

Centro de Genética y Genómica, Facultad de Medicina Clínica Alemana

Universidad del Desarrollo

Santiago, Chile

1
Andrea Miyasaka

Profesor Asociado

Facultad de Ciencias

Universidad Mayor

Huechuraba, Chile

1
Boris Sagredo

INIA-RAYENTUÉ

Rengo, Chile

1
Adriana Bastias

DOCENTE

FAC. CS. SALUD

UNIVERSIDAD AUTONOMA DE CHILE

Santiago, Chile

1
Ruben Almada

PRINCIPAL INVESTIGATOR

GENOMICS

CENTRO DE ESTUDIOS AVANZADOS EN FRUTICULTURA

Rengo, Chile

1
Luis Pastenes

Profesor Auxiliar

Departamento de Biología y Química

Universidad Católica del Maule

Talca, Chile

1
Eleodoro Riveras

Investigador postdoctoral

Instituto de Biologia Integrativa, Ibio

Santiago, Chile

1
MARIA ARISMENDI

1
Francisca Díaz

Investigadora

Instituto de Geografía

Pontificia Universidad Católica de Valparaíso

VALPARAISO, Chile

1
Cristian Hernández

Assistant Professor

Gastroenterology

Pontificia Universidad Católica de Chile

Santiago, Chile

1
Carlos Chacon

Asistente de Investigación

Impact

Universidad de Los Andes

Santiago, Chile

1
Carolina Pavez

GASTROENTEROLOGO

GASTROENTEROLOGIA

Pontificia Universidad Católica de Chile

SANTIAGO, Chile

1
Maria Bustamante

Profesora Asistente

Facultad de Medicina

Universidad de Chile

Santiago , Chile

1
Carlos Gil

Coordinador del area de Biotecnología

Spora SPA

Santiago de Chile, Chile