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Juan Pablo Cardenas Astudillo

Assistant Professor

Universidad Mayor de Chile

Santiago, Chile

Líneas de Investigación


* Genómica comparativa y Filogenómica de organismos de la microbiota intestinal * Análisis de la composición, diversidad y función del microbioma intestinal humano con potenciales aplicaciones en enfermedades metabólicas

Educación

  •  Biochemistry, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2008
  •  Biochemistry, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2008
  •  Biotechnology, Universidad Andres Bello. Chile, 2015

Experiencia Académica

  •   Phd candidate Full Time

    Fundacion Ciencia y Vida (FCV)

    Santiago, Chile

    2011 - 2015

  •   Research Assistant Full Time

    Fundacion Ciencia y Vida (FCV)

    Santiago, Chile

    2008 - 2010

  •   Assistant Professor Full Time

    Universidad Mayor

    Biology

    Santiago, Chile

    2019 - A la fecha

Experiencia Profesional

  •   Senior Bioinformatician Full Time

    uBiome

    Santiago, Chile

    2016 - 2019

  •   Research assistant (INNOVA project 08CM01-03) Full Time

    Fundacion Ciencia y Vida

    Santiago, Chile

    2008 - 2010

Premios y Distinciones

  •   Beca de Estudios de Doctorado en Chile

    COMISION NACIONAL DE INVESTIGACION CIENTIFICA Y TECNOLOGICA

    Chile, 2010

    Beca para estudios de doctorado en Chile.


 

Article (22)

A novel sequencing-based vaginal health assay combining self-sampling, HPV detection and genotyping, STI detection, and vaginal microbiome analysis
Self-Sampling for Human Papillomavirus Testing: Increased Cervical Cancer Screening Participation and Incorporation in International Screening Programs
16S rRNA gene sequencing and healthy reference ranges for 28 clinically relevant microbial taxa from the human gut microbiome
Draft genome sequence of Acidithiobacillus thiooxidans CLST isolated from the acidic hypersaline Gorbea salt flat in northern Chile
Draft genome sequence of the type strain of the sulfur-oxidizing acidophile, Acidithiobacillus albertensis (DSM 14366)
Molecular Systematics of the Genus Acidithiobacillus: Insights into the Phylogenetic Structure and Diversification of the Taxon
Aerobic Lineage of the Oxidative Stress Response Protein Rubrerythrin Emerged in an Ancient Microaerobic, (Hyper)Thermophilic Environment
Genomic and metagenomic challenges and opportunities for bioleaching: a mini-review
SinEx DB: a database for single exon coding sequences in mammalian genomes
Reclassification of 'Thiobacillus prosperus' Huber and Stetter 1989 as Acidihalobacter prosperus gen. nov., sp nov., a member of the family Ectothiorhodospiraceae
Draft genome sequence of the iron-oxidizing acidophile Leptospirillum ferriphilum type strain DSM 14647
Draft Genome Sequence of the Iron-Oxidizing, Acidophilic, and Halotolerant "Thiobacillus prosperus" Type Strain DSM 5130
Draft genome sequence of the nominated type strain of "Ferrovum myxofaciens,"" an acidophilic, iron-oxidizing betaproteobacterium"
Genetic variability of psychrotolerant Acidithiobacillus ferrivorans revealed by (meta)genomic analysis
Multi Locus Sequence Typing scheme for Acidithiobacillus caldus strain evaluation and differentiation
Architecture and Gene Repertoire of the Flexible Genome of the Extreme Acidophile Acidithiobacillus caldus
Comparative genomics of the oxidative stress response in bioleaching microorganisms
Thiol/Disulfide System Plays a Crucial Role in Redox Protection in the Acidophilic Iron-Oxidizing Bacterium Leptospirillum ferriphilum
Comparative genomics begins to unravel the ecophysiology of bioleaching
Genes and pathways for CO2 fixation in the obligate, chemolithoautotrophic acidophile, Acidithiobacillus ferrooxidans, Carbon fixation in A. ferrooxidans
Predicted CO/CO2 fixation in Ferroplasma spp. via a novel chimaeric pathway
Microarray and bioinformatic analyses suggest models for carbon metabolism in the autotroph Acidithiobacillus ferrooxidans

BookSection (1)

Chapter 11: Progress in Acidophile Genomics

ConferencePaper (3)

Comparative study of redox stress response in the acidophilic bacteria Leptospirillum ferriphilum and Acidithiobacillus ferrooxidans
Predicted CO/CO(2) fixation in Ferroplasma spp. via a novel chimaeric pathway
Prediction of FNR regulated genes and metabolic pathways potentially involved in anaerobic growth of Acidithiobacillus ferrooxidans

Patent (1)

Method and system for panel characterizations

Proyecto (2)

“Desarrollo de Arreglos de ADN Especializados para el monitoreo de Transcriptomas Industriales de Biolixiviación”
ESTRATEGIAS BIOINFORMATICAS Y DE GENOMICA FUNCIONAL EN LA COMPRENSION DE LA INUSUAL FISIOLOGIA DE LA BACTERIANA ACIDITHIOBACILLUS FERROOXIDANS.

Review (1)

Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms
27
Juan Cardenas

Assistant Professor

Universidad Mayor de Chile

Santiago, Chile

16
David Holmes

Head, Laboratory of Bioinformatics and Genome Biology

Center for Bioinformatics and Genome Biology

FUNDACION CIENCIA & VIDA

Santiago, Chile

14
Raquel Quatrini

Research Associate

Fundación Ciencia & Vida

Santiago, Chile

6
Paulo Covarrubias

Profesional

Genética Molecular

Instituto de Salud Pública

Santiago, Chile

5
Jorge Valdes

I

CENTRO DE GENOMICA Y BIOINFORMATICA

UNIVERSIDAD MAYOR

Santiago, Chile

3
Harold Nuñez

PostDoc

FUNDACIÓN CIENCIA PARA LA VIDA

Santiago, Chile

2
RODRIGO FLORES

Investigador

Biología Celular y Molecular

Universidad de Chile

Macul, Chile

2
Gloria Levican

Académica Profesora Titular

Departamento de Biología

UNIVERSIDAD DE SANTIAGO DE CHILE

Santiago, Chile

1
CRISTIAN BRAVO

Profesional

Laboratorio Biomédico

Instituto Salud Publica

Santiago, Chile

1
Luis Leon

Director of Bioinformatics

R&D

Genoma Mayor SpA

Santiago, Chile

1
Juan Ugalde

Adjunct Researcher

Facultad de Ingenieria

Universidad del Desarrollo

Santiago, Chile

1
Mauricio Acosta

Investigador

Universidad Católica del Norte

Antofagasta, Chile

1
LILLIAN ACUÑA

INVESTIGADOR POST-DOCTORAL FONDECYT

Laboratorio de Genética y Patógenesis Bacteriana

Universidad Andrés Bello

SANTIAGO, Chile

1
Héctor Osorio

Postdoctorado

Departamento Genética Molecular y Microbiología

Pontificia Universidad Católica de Chile

Santiago, Chile

1
Francisco Moya

Postdoctoral Associate

Medicina

MICROB-R

Santiago, Chile

1
Claudia Lefimil

Profesor Asistente

Instituto de Investigación en Ciencias odontológicas

UNIVERSIDAD DE CHILE

Santiago, Chile

1
Katia Soto

Académica

Universidad de Chile

Santiago, Chile

1
Pedro Galleguillos

Investigador Titular

Minería

CICITEM

Antofagasta, Chile

1
Lorena Escudero

Investigador

Medio ambiente

CICITEM

Antofagasta, Chile

1
Renato Chavez

Full Professor

Biology

UNIVERSIDAD DE SANTIAGO DE CHILE

Santiago, Chile

1
Gonzalo Riadi

Assistant Professor

Bioinformatics

Universidad de Talca

Talca, Chile