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Vinicius Ramos Henriques Maracaja Coutinho

Associate Professor

Univesidad de Chile

Santiago, Chile

(i) computational systems biology; (ii) RNA bioinformatics; (iii) comparative genomics; (iv) epitranscriptomics of diseases; (v) single-cell transcriptomics; and (vi) development of computational tools/databases

Bioinformatics, UNIVERSIDADE DE SAO PAULO. Brasil, 2013
Biological Sciences, UNIVERSIDADE FEDERAL DA PARAIBA. Brasil, 2006

Assistant Professor Full Time

UNIVERSIDAD MAYOR

Facultad de Ciencias

Santiago, Chile

2013 - 2017
Assistant Professor Full Time

UNIVERSIDAD DE CHILE

Facultad de Ciencias Químicas y Farmacéuticas

Santiago, Chile

2018 - 2022
Associate Professor Full Time

UNIVERSIDAD DE CHILE

Facultad de Ciencias Químicas y Farmacéuticas

Santiago, Chile

2022 - A la fecha
Visiting Professor Other

FUNDACAO OSWALDO CRUZ

Instituto Gonçalo Moniz

Salvador, Brasil

2023 - 2023
Visiting Researcher Other

UNIVERSITY OF CAMBRIDGE

Gurdon Institute

Cambridge, Reino Unido

2018 - 2018
Visiting Researcher Other

Institut de Recherche pour le Développement - IRD

Montpellier, Francia

2022 - 2022
Visiting Researcher Other

UNIVERSIDADE FEDERAL DE PARAIBA

Joao Pessoa, Brasil

2014 - 2015

Fundador Other

Beagle Bioinformatics

Santaigo, Chile

2013 - A la fecha

MSc: 6 graduated students since 2015, 2 in progress.
PhD: 7 graduated students since 2019, 11 in progress.

- Founder and Director of the Graduate Program on Bioinformatics and Computational Biology from the Facultad de Ciencias Químicas y Farmacéuticas de la Universidad de Chile, launched in 2019.

- He coordinado y participado como profesor de cátedra de diversos cursos referentes a Estadística, Programación, Genómica y Bioinformática para distintas carreras de pregrado en la Universidad de Chile y Universidad Mayor.

- He coordinado y participado como profesor de cátedra de diversos cursos referentes a Estadística, Programación, Genómica y Bioinformática para distintos programas de doctorado en la Universidad de Chile, Universidad Mayor y Universidad de La Frontera.

- 2014-2015: Founder of the DIB Talks - Disruptive Ideas in Biotech (www.dibtalks.com), a series of talks that aims to disseminate and popularize disjunctive technologies associated with the Biosciences.

- 2014-2016: Founder of a digital platform for collective financing of scientific projects "Dodo Scientific Crowdfunding" (www.dodofunding.com).

- Participation as an exhibitor or organizer in different scientific events, scientific entrepreneurship or scientific dissemination throughout the country.

Parallella University Program - PUP

Adapteva

Estados Unidos, 2014

Selected to be part of the Parallela University Program, from Adapteva. The goal of the project is to apply computational biology algorithms in the low cost super computer Parallella.
2nd Austral BIO Challenge

UNIVERSIDAD AUSTRAL DE CHILE

Chile, 2014

One of the winners of the 2nd Austral BioChallenge, from Austral Incuba / Universidad Austral de Chile.
GBR GapSummit Biotech Leader of Tomorrow

Global Biotech Revolution

Reino Unido, 2014

Selected one of the Leaders of Tomorrow of Biotechnology, due to my work trying to solve the gaps we current have in funding biotech projects.
3rd Place Poster Award. ISCB Latin America Conference

ISCB Latin America Conference

Argentina, 2016

3rd Place Poster Award. International Society for Computational Biology Latin America Conference, Buenos Aires, Argentina.
1st Place Poster Award. Copec-UC “Big Data” Conference

FUNDACION COPEC UNIVERSIDAD CATOLICA

Chile, 2015

2015 – 1st Place Poster Award. Copec-UC “Big Data” Conference, Santiago, Chile.
Start-Up Chile Recognition Program

CORPORACION DE FOMENTO DE LA PRODUCCION

Chile, 2014

Start-Up Chile Recognition Program, Start-Up Chile, Santiago, Chile.
Fundacity Entrepreneur of the Week

Fundacity

Chile, 2013

Fundacity Entrepreneur of the Week.
Honorable Mention: Databases & Data Integration, Text Mining and Information Extraction

Associação Brasileira de Bioinformática e Biologia Computacional

Brasil, 2012

Honorable Mention: Databases & Data Integration, Text Mining and Information Extraction. X-Meeting 2012, Associação Brasileira de Bioinformática e Biologia Computacional – AB3C, Campinas, Brazil.
Prêmio Elo Cidadão

Universidade Federal de Paraíba

Chile, 2007

Premiación por el trabajo de extensión universitaria asociada a la difusión de la Bioinformática e inserción digital de la comunidad.
Prêmio Elo Cidadão

Universidade Federal de Paraíba

Chile, 2005

Premiación por el trabajo de extensión universitaria asociada a la difusión de la Bioinformática e inserción digital de la comunidad.
2nd Best Place Poster Award. X-Meeting 2005

Associação Brasileira de Bioinformática e Biologia Computacional

Chile, 2005

2nd Best Place Poster Award. X-Meeting 2005, Associação Brasileira de Bioinformática e Biologia Computacional – AB3C, Caxambu, Brazil.


<i>Salmo salar</i> Skin and Gill Microbiome during <i>Piscirickettsia salmonis</i> Infection Godoy, Marcos; Coca, Yoandy; Suarez, Rudy; Montes de Oca, Marco; Bledsoe, Jacob W.; Burbulis, Ian; Caro, Diego; Pontigo, Juan Pablo; Maracaja-Coutinho, Vinicius; Arias-Carrasco, Raul; Rodriguez-Cordova, Leonardo; Saez-Navarrete, Cesar Article ISI Animals (2024)
Administration of Secretome Derived from Human Mesenchymal Stem Cells Induces Hepatoprotective Effects in Models of Idiosyncratic Drug-Induced Liver Injury Caused by Amiodarone or Tamoxifen Huang, Ya-Lin; De Gregorio, Cristian; Silva, Veronica; Elorza, Alvaro A.; Leniz, Patricio; Aliaga-Tobar, Victor; Maracaja-Coutinho, Vinicius; Budini, Mauricio; Ezquer, Fernando; Ezquer, Marcelo Article ISI CELLS (2023)
Bacterial networks in Atlantic salmon with Piscirickettsiosis Coca, Yoandy; Godoy, Marcos; Pontigo, Juan Pablo; Caro, Diego; Maracaja-Coutinho, Vinicius; Arias-Carrasco, Raul; Rodriguez-Cordova, Leonardo; de Oca, Marco Montes; Saez-Navarrete, Cesar; Burbulis, Ian Article ISI SCIENTIFIC REPORTS (2023)
Computational approaches for circRNAs prediction and in silico characterization Rebolledo, Camilo; Silva, Juan Pablo; Saavedra, Nicolas; Maracaja-Coutinho, Vinicius Article ISI BRIEFINGS IN BIOINFORMATICS (2023)
Differences in Bacterial Small RNAs in Stool Samples from Hypercholesterolemic and Normocholesterolemic Subjects Morales, Cristian; Arias-Carrasco, Raul; Maracaja-Coutinho, Vinicius; Seron, Pamela; Lanas, Fernando; Salazar, Luis A.; Saavedra, Nicolas Article ISI INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)
Editorial: Applications of biological networks in biomedicine Maracaja-Coutinho, Vinicius; Di Genova, Alex; Siegel, Anne; Latorre, Mauricio Article ISI FRONTIERS IN MOLECULAR BIOSCIENCES (2023)
Effects of Trimetazidine on Right Ventricular Function and Ventricular Remodeling in Patients with Pulmonary Artery Hypertension: A Randomised Controlled Trial Verdejo, Hugo E. E.; Rojas, Adolfo; Lopez-Crisosto, Camila; Baraona, Fernando; Gabrielli, Luigi; Maracaja-Coutinho, Vinicius; Chiong, Mario; Lavandero, Sergio; Castro, Pablo F. F. Article ISI JOURNAL OF CLINICAL MEDICINE (2023)
Single-cell transcriptional landscape of long non-coding RNAs orchestrating mouse heart development Ramos, Thais A. R.; Urquiza-Zurich, Sebastian; Kim, Soo Young; Gillette, Thomas G.; Hill, Joseph A.; Lavandero, Sergio; do Rego, Thais G.; Maracaja-Coutinho, Vinicius Article ISI CELL DEATH & DISEASE (2023)
Ten quick tips for harnessing the power of ChatGPT in computational biology Lubiana, Tiago; Lopes, Rafael; Medeiros, Pedro; Silva, Juan Carlo; Goncalves, Andre Nicolau Aquime; Maracaja-Coutinho, Vinicius; Nakaya, Helder I. Article ISI PLOS COMPUTATIONAL BIOLOGY (2023)
Transcriptional Signatures and Network-Based Approaches Identified Master Regulators Transcription Factors Involved in Experimental Periodontitis Pathogenesis Vicencio, Emiliano; Nunez-Belmar, Josefa; Cardenas, Juan P.; Cortes, Bastian I.; Martin, Alberto J. M.; Maracaja-Coutinho, Vinicius; Rojas, Adolfo; Cafferata, Emilio A.; Gonzalez-Osuna, Luis; Vernal, Rolando; Cortez, Cristian Article ISI INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)
Characterization of microbial communities from gut microbiota of hypercholesterolemic and control subjects Morales, Cristian; Rojas, Gabriel; Rebolledo, Camilo; Rojas-Herrera, Marcelo; Arias-Carrasco, Raul; Cuadros-Orellana, Sara; Maracaja-Coutinho, Vinicius; Saavedra, Kathleen; Leal, Pamela; Lanas, Fernando; Salazar, Luis A.; Saavedra, Nicolas Article ISI FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2022)
Comparative Profiling of Circulating Exosomal Small RNAs Derived From Peruvian Patients With Tuberculosis and Pulmonary Adenocarcinoma Guio, Heinner; Aliaga-Tobar, Victor; Galarza, Marco; Pellon-Cardenas, Oscar; Capristano, Silvia; Gomez, Henry L.; Olivera, Mivael; Sanchez, Cesar; Maracaja-Coutinho, Vinicius Article ISI FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2022)
Insights into agar and secondary metabolite pathways from the genome of the red alga Gracilaria domingensis (Rhodophyta, Gracilariales) Nakamura-Gouvea, Natalia; Alves-Lima, Cicero; Benites, Luiz Felipe; Iha, Cintia; Maracaja-Coutinho, Vinicius; Aliaga-Tobar, Victor; Carneiro, Marcella; Yokoya, Nair S.; Marinho-Soriano, Eliane; Graminha, Marcia A. S.; Collen, Jonas; Oliveira, Mariana C.; Setubal, Joao C.; Colepicolo, Pio Article ISI JOURNAL OF PHYCOLOGY (2022)
Mitochondrial E3 ubiquitin ligase 1 (MUL1) as a novel therapeutic target for diseases associated with mitochondrial dysfunction Calle, Ximena; Garrido-Moreno, Valeria; Lopez-Gallardo, Erik; Norambuena-Soto, Ignacio; Martinez, Daniela; Penaloza-Otarola, Allan; Troncossi, Angelo; Guerrero-Moncayo, Alejandra; Ortega, Angelica; Maracaja-Coutinho, Vinicius; Parra, Valentina; Chiong, Mario; Lavandero, Sergio Article ISI IUBMB LIFE (2022)
Small RNA Expression Profiling Reveals hsa-miR-181d-5p Downregulation Associated With TNF-alpha Overexpression in Sjogren's Syndrome Patients Castro, Isabel; Carvajal, Patricia; Jara, Daniela; Aguilera, Sergio; Heathcote, Benjamin; Barrera, Maria-Jose; Aliaga-Tobar, Victor; Maracaja-Coutinho, Vinicius; Urzua, Ulises; Quest, Andrew F. G.; Gonzalez, Sergio; Molina, Claudio; Hermoso, Marcela; Gonzalez, Maria-Julieta Article ISI FRONTIERS IN IMMUNOLOGY (2022)
Computational Analysis of Transposable Elements and CircRNAs in Plants Oliveira, Liliane Santana; Patera, Andressa Caroline; Domingues, Douglas Silva; Sanches, Danilo Sipoli; Lopes, Fabricio Martins; Bugatti, Pedro Henrique; Maeda Saito, Priscila Tiemi; Maracaja-Coutinho, Vinicius; Durham, Alan Mitchell; Paschoal, Alexandre Rossi; Vaschetto, LM Article ISI NEISSERIA MENINGITIDIS (2021)
Deletion of hippocampal Glucocorticoid receptors unveils sex-biased microRNA expression and neuronal morphology alterations in mice Tejos-Bravo, Macarena; Oakley, Robert H.; Whirledge, Shannon D.; Corrales, Wladimir A.; Silva, Juan P.; Garcia-Rojo, Gonzalo; Toledo, Jorge; Sanchez, Wendy; Roman-Albasini, Luciano; Aliaga, Esteban; Aguayo, Felipe; Olave, Felipe; Maracaja-Coutinho, Vinicius; Cidlowski, John A.; Fiedler, Jenny L. Article ISI NEUROBIOLOGY OF STRESS (2021)
Development of a Multiplex PCR Assay for Genotyping the Fish Pathogen Piscirickettsia salmonis Through Comparative Genomics Isla, Adolfo; Martinez-Hernandez, J. Eduardo; Levipan, Hector A.; Haussmann, Denise; Figueroa, Jaime; Rauch, Maria Cecilia; Maracaja-Coutinho, Vinicius; Yanez, Alejandro Article ISI FRONTIERS IN MICROBIOLOGY (2021)
Long non-coding RNAs associated with infection and vaccine-induced immunity Luscher-Dias, Thomaz; Conceicao, Izabela Mamede; Schuch, Viviane; Maracaja-Coutinho, Vinicius; Amaral, Paulo P.; Nakaya, Helder I.; Hon, CC Article ISI NON-CODING GENOME (2021)
Network-Based Approaches Reveal Potential Therapeutic Targets for Host-Directed Antileishmanial Therapy Driving Drug Repurposing Eduardo Martinez-Hernandez, J.; Hammoud, Zaynab; de Sousa, Alessandra Mara; Kramer, Frank; do Monte-Neto, Rubens L.; Maracaja-Coutinho, Vinicius; Martin, Alberto J. M. Article ISI MICROBIOLOGY SPECTRUM (2021)
Novel molecular insights and public omics data in pulmonary hypertension Lopez-Crisosto, Camila; Arias-Carrasco, Raul; Sepulveda, Pablo; Garrido-Olivares, Luis; Maracaja-Coutinho, Vinicius; Verdejo, Hugo E.; Castro, Pablo F.; Lavandero, Sergio Article ISI BIOCHIMICA ET BIOPHYSICA ACTA-MOLECULAR BASIS OF DISEASE (2021)
OUTBREAK: a user-friendly georeferencing online tool for disease surveillance Arias-Carrasco, Raul; Giddaluru, Jeevan; Cardozo, Lucas E.; Martins, Felipe; Maracaja-Coutinho, Vinicius; Nakaya, Helder I. Article ISI BIOLOGICAL RESEARCH (2021)
Sex-Dependent Changes of miRNA Levels in the Hippocampus of Adrenalectomized Rats Following Acute Corticosterone Administration Corrales, Wladimir A.; Silva, Juan P.; Parra, Claudio S.; Olave, Felipe A.; Aguayo, Felipe, I; Roman-Albasini, Luciano; Aliaga, Esteban; Venegas-Zamora, Leslye; Avalos, Ana M.; Rojas, Paulina S.; Maracaja-Coutinho, Vinicius; Oakley, Robert H.; Cidlowski, John A.; Fiedler, Jenny L. Article ISI ACS Chemical Neuroscience (2021)
Angiotensin-(1–9) prevents cardiomyocyte hypertrophy by controlling mitochondrial dynamics via miR-129-3p/PKIA pathway Sotomayor-Flores C.; Rivera-MejÃas P.; VÃ¡squez-Trincado C.; LÃ³pez-Crisosto C.; Morales P.E.; Pennanen C.; Polakovicova I.; Aliaga-Tobar V.; GarcÃa L.; Roa, J.C; Rothermel, B. A.; Maracaja-Coutinho V.; Ho-Xuan H.; Meister G.; Chiong M.; Ocaranza M.P.; CorvalÃ¡n A.H.; Parra V.; Lavandero S. Article ISI SCOPUS Cell Death and Differentiation (2020)
CORAZON: a web server for data normalization and unsupervised clustering based on expression profiles Ramos, Thais A. R.; Maracaja-Coutinho, Vinicius; Ortega, J. Miguel; do Rego, Thais G. Article ISI BMC Research Notes (2020)
Down syndrome and Alzheimer's disease: common molecular traits beyond the amyloid precursor protein Gomez W.; Morales R.; Maracaja-Coutinho V.; Parra V.; Nassif M. Article ISI SCOPUS AGING-US (2020)
Editorial: User-Friendly Tools Applied to Genetics or Systems Biology Nakaya, Helder I.; Thakar, Juilee; Maracaja-Coutinho, Vinicius Article ISI FRONTIERS IN GENETICS (2020)
Epigenetic Reader BRD4 (Bromodomain-Containing Protein 4) Governs Nucleus-Encoded Mitochondrial Transcriptome to Regulate Cardiac Function Kim, Soo Young; Zhang, Xin; Schiattarella, Gabriele G.; Altamirano, Francisco; Ramos, Thais A. R.; French, Kristin M.; Jiang, Nan; Szweda, Pamela A.; Evers, Bret M.; May, Herman, I; Luo, Xiang; Li, Hongliang; Szweda, Luke, I; Maracaja-Coutinho, Vinicius; Lavandero, Sergio; Gillette, Thomas G.; Hill, Joseph A Article ISI CIRCULATION (2020)
Genome-wide analysis of in vivo CcpA binding with and without its key co-factor HPr in the major human pathogen group A Streptococcus DebRoy, Sruti; Aliaga-Tobar, Victor; Galvez, Gabriel; Arora, Srishtee; Liang, Xiaowen; Horstmann, Nicola; Maracaja-Coutinho, Vinicius; "Latorre, Mauricio"; Hook, Magnus; Flores, Anthony R.; Shelburne, Samuel A. Article ISI MOLECULAR MICROBIOLOGY (2020)
Human adipose-derived mesenchymal stem cell-conditioned medium ameliorates polyneuropathy and foot ulceration in diabetic BKS db/db mice De Gregorio, Cristian; Contador, David; Díaz, Diego; Cárcamo, Constanza; Santapau, Daniela; Lobos-Gonzalez, Lorena; Acosta, Cristian; Campero, Mario; Carpio, Daniel; Gabriele, Caterina; Gaspari, Marco; Aliaga-Tobar, Victor; Maracaja-Coutinho, Vinicius; Ezquer, Marcelo; Ezquer, Fernando Article STEM CELL RESEARCH & THERAPY (2020)
Mitochondrial transfer from MSCs to T cells induces Treg differentiation and restricts inflammatory response Court, Angela C.; Le-Gatt, Alice; Luz-Crawford, Patricia; Parra, Eliseo; Aliaga-Tobar, Victor; Federico Batiz, Luis; Contreras, Rafael A.; Ignacia Ortuzar, Maria; Kurte, Monica; Elizondo-Vega, Roberto; Maracaja-Coutinho, Vinicius; Pino-Lagos, Karina; Figueroa, Fernando E.; Khoury, Maroun Article ISI SCOPUS EMBO REPORTS (2020)
Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool GonÃ§alves A.N.A.; Lever M.; Russo P.S.T.; Gomes-Correia B.; Urbanski A.H.; Pollara G.; Noursadeghi M.; Maracaja-Coutinho V.; Nakaya H.I. Article ISI SCOPUS FRONTIERS IN GENETICS (2019)
Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination de Lima D.S.; Cardozo L.E.; Maracaja-Coutinho V.; Suhrbier A.; Mane K.; Jeffries D.; Silveira E.L.V.; Amaral P.P.; Rappuoli R.; de Silva T.I.; Nakaya H.I. Article ISI SCOPUS PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA (2019)
Noncoding RNAs Databases=> Current Status and Trends. Maracaja-Coutinho, Vinicius; Paschoal, Alexandre Rossi; Caris-Maldonado, José Carlos; Borges, Pedro Vinícius; Ferreira, Almir José; Durham, Alan Mitchell Article Methods in molecular biology (Clifton, N.J.) (2019)
Prediction of MicroRNAs in the Epstein-Barr Virus Reveals Potential Targets for the Viral Self-Regulation. Serrano-Solis, Victor; Carlos, Angelica Cardoso; Maracaja-Coutinho, Vinicius; de Farias, Sávio Torres Article Indian journal of microbiology (2019)
webCEMiTool=> Co-expression Modular Analysis Made Easy. Cardozo, Lucas E; Russo, Pedro S T; Gomes-Correia, Bruno; Araujo-Pereira, Mariana; Sepúlveda-Hermosilla, Gonzalo; Maracaja-Coutinho, Vinicius; Nakaya, Helder I Article Frontiers in genetics (2019)
A regulatory RNA is involved in RNA duplex formation and biofilm regulation in Sulfolobus acidocaldarius Orell, A; Tripp, V; Aliaga-Tobar, V; Albers, SV; Maracaja-Coutinho, V; Randau, L Article ISI NUCLEIC ACIDS RESEARCH (2018)
CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses Russo, PST; Ferreira, GR; Cardozo, LE; Burger, MC; Arias-Carrasco, R; Maruyama, SR; Hirata, TDC; Lima, DS; Passos, FM; Fukutani, KF; Lever, M; Silva, JS; Maracaja-Coutinho, V; Nakaya, HI Article ISI SCOPUS BMC BIOINFORMATICS (2018)
Genome-wide circulating microRNA expression profiling reveals potential biomarkers for amyotrophic lateral sclerosis José Manuel Matamala, Raul Arias-Carrasco, Carolina Sanchez, Markus Uhrig, Leslie Bargsted, Soledad Matus, Vinicius Maracaja-Coutinho, Sebastian Abarzua, Brigitte van Zundert, Renato Verdugo, Patricio Manque, Claudio Hetz Article ISI SCOPUS NEUROBIOLOGY OF AGING (2018)
Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci Amaral, PP; Leonardi, T; Han, N; Vire, E; Gascoigne, DK; Arias-Carrasco, R; Buscher, M; Pandolfini, L; Zhang, AD; Pluchino, S; Maracaja-Coutinho, V; Nakaya, HI; Hemberg, M; Shiekhattar, R; Enright, AJ; Kouzarides, T Article ISI SCOPUS GENOME BIOLOGY (2018)
Long Non-Coding RNAs Responsive to Salt and Boron Stress in the Hyper-Arid Lluteno Maize from Atacama Desert Huanca-Mamani, W; Arias-Carrasco, R; Cardenas-Ninasivincha, S; Rojas-Herrera, M; Sepulveda-Hermosilla, G; Caris-Maldonado, JC; Bastias, E; Maracaja-Coutinho, V Article ISI SCOPUS GENES (2018)
StructRNAfinder: an automated pipeline and web server for RNA families prediction Arias-Carrasco, R; Vasquez-Moran, Y; Nakaya, HI; Maracaja-Coutinho, V Article ISI SCOPUS BMC BIOINFORMATICS (2018)
Comparative Pan-Genome Analysis of Piscirickettsia salmonis Reveals Genomic Divergences within Genogroups. Nourdin-Galindo, Guillermo; Sánchez, Patricio; Molina, Cristian F; Espinoza-Rojas, Daniela A; Oliver, Cristian; Ruiz, Pamela; Vargas-Chacoff, Luis; Cárcamo, Juan G; Figueroa, Jaime E; Mancilla, Marcos; Maracaja-Coutinho, Vinicius; Yañez, Alejandro J Article Frontiers in cellular and infection microbiology (2017)
LeishDB=> a database for coding gene annotation and non-coding RNAs in Leishmania braziliensis Torres, Felipe; Arias-Carrasco, Raúl; Caris-Maldonado, José C; Barral, Aldina; Maracaja-Coutinho, Vinicius; Queiroz, Artur TL Article DATABASE (2017)
A Guide to Scientific Crowdfunding Vachelard, J; Gambarra-Soares, T; Augustini, G; Riul, P; Maracaja-Coutinho, V Article ISI SCOPUS PLoS Biology (2016)
A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm de Brito, DM; Maracaja-Coutinho, V; de Farias, ST; Batista, LV; do Rego, TG Article ISI SCOPUS PLOS ONE (2016)
miRQuest: integration of tools on a Web server for microRNA research Aguiar R.R.; Ambrosio L.A.; Sepúlveda-Hermosilla G.; Maracaja-Coutinho, V; Paschoal, A. R. Article ISI SCOPUS GENETICS AND MOLECULAR RESEARCH (2016)
Complete Genome Sequence of Salmonella enterica Serovar Enteritidis Bacteriophage f18SE, Isolated in Chile Segovia, Cristopher; Vasquez, Ignacio; Maracaja-Coutinho, Vinicius; Robeson, James; Santander, Javier Article Scopus Genome Announcements (2015)
Deep Sequencing Reveals the Complete Genome and Evidence for Transcriptional Activity of the First Virus-Like Sequences Identified in Aristotelia chilensis (Maqui Berry) Villacreses, J; Rojas-Herrera, M; Sánchez C; Hewstone, N; Undurraga, SF; Alzate, JF; Manque P.; Maracaja-Coutinho, V; Polanco V. Article ISI SCOPUS Viruses (2015)
Draft Genome of Chilean Honeybee (Apis mellifera) Gut Strain Lactobacillus kunkeei MP2 Olmos, Alejandro; Henríquez-Piskulich, Patricia; Sanchez, Carolina; Rojas-Herrera, Marcelo; Moreno-Pino, Mario; Gómez, Marcela; Da Silva, Rafael R.; Maracaja-Coutinho, Vinicius; Aldea, Patricia; Trombert, Annette N. Article Scopus Genome Announcements (2014)
Draft Genome of Chilean Honeybee (Apis mellifera) Gut Strain Lactobacillus kunkeei MP2. Olmos, Alejandro; Henríquez-Piskulich, Patricia; Sanchez, Carolina; Rojas-Herrera, Marcelo; Moreno-Pino, Mario; Gómez, Marcela; Rodríguez Da Silva, Rafael; Maracaja-Coutinho, Vinicius; Aldea, Patricia; Trombert, Annette N Article Genome announcements (2014)
Draft genome sequence of the virulent strain AUSTRAL-005 of Piscirickettsia salmonis, the etiological agent of piscirickettsiosis (SPS) Yañez, Alejandro J.; Molina, Cristian; Haro, Ronie E.; Sanchez, Patricio; Isla, Adolfo; Mendoza, Julio; Rojas-Herrera, Marcelo; Trombert, Annette; Silva, Andrea X.; Cárcamo, Juan G.; Figueroa, Jaime; Polanco, Victor; Manque, Patricio; Maracaja-Coutinho, Vinicius; Olavarría, Víctor H. Article Scopus Genome Announcements (2014)
Draft Genome Sequence of Virulent Strain AUSTRAL-005 of Piscirickettsia salmonis, the Etiological Agent of Piscirickettsiosis. Yañez, Alejandro J; Molina, Cristian; Haro, Ronie E; Sanchez, Patricio; Isla, Adolfo; Mendoza, Julio; Rojas-Herrera, Marcelo; Trombert, Annette; Silva, Andrea X; Cárcamo, Juan G; Figueroa, Jaime; Polanco, Victor; Manque, Patricio; Maracaja-Coutinho, Vinicius; Olavarría, Víctor H Article Genome announcements (2014)
Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations Fachel, Angela A.; Tahira, Ana C.; Vilella-Arias, Santiago A.; Maracaja-Coutinho, V; Gimba, Etel P.R.; Vignal, Giselle M.; Campos, Franz S.; Reis, Eduardo M.; Verjovski-Almeida, Sergio Article Biological Abstracts BIOSIS CAS Citebase Current contents DOAJ Embase EmBiology Google Scholar Index Copernicus MEDLINE OAIster PubMed PubMed Central Science Citation Index Expanded SCImago Scopus SOCOLAR Zetoc MOLECULAR CANCER (2013)
Non-coding transcription characterization and annotation: A guide and web resource for non-coding RNA databases Paschoal, Alexandre R.; Maracaja?Coutinho, Vinicius; Setubal, João C.; Simões, Zilá L.P.; Verjovski-Almeida, Sergio; Durham, Alan M. Article Medline PubMed PubMed Central Science Citation Index ISI Web of Science ISI Alerting Services Biosis Previews Biological Abstracts RNA BIOLOGY (2012)
Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer Tahira, Ana C.; Kubrusly, Márcia S.; Faria, Michele F.; Dazzani, Bianca; Fonseca, Rogério S.; Maracaja-Coutinho, Vinicius; Verjovski-Almeida, Sergio; Machado, Marcel C. C.; Reis, Eduardo M. Article Biological Abstracts BIOSIS CAS Citebase Current contents DOAJ Embase EmBiology Google Scholar Index Copernicus MEDLINE OAIster PubMed PubMed Central Science Citation Index Expanded SCImago Scopus SOCOLAR Zetoc MOLECULAR CANCER (2011)
Non-coding RNAs in schistosomes: an unexplored world Oliveira, Katia C.; Carvalo, Mariana L.P.; Maracaja?Coutinho, Vinicius; Kitajima, João P.; Verjovski-Almeida, Sergio Article Chemical Abstracts Service Index Medicus Medline Literatura Latino-Americana em Ciências da Saúde, Lilacs Bibliography and Index of Geology Institut de l' Information Scientifique et Technique (INIST) Mathematical Reviews Zentralblatt Math BIOSIS Periodica Science Citation Index (ISI) ISI Alerting Services Current Contents® Physical, Chemical and Earth Sciences ANAIS DA ACADEMIA BRASILEIRA DE CIENCIAS (2011)
Relation of pretreatment sequence diversity in NS5A region of HCV genotype 1 with immune response between pegylated-INF/ribavirin therapy outcomes Queiroz, A.T.L.; Maracaja?Coutinho, Vinicius; Jardim, A.C.G.; Rahal, P.; Matioli, Sergio R.;; Mello, I.M.V.G.C. Article Abstracts in Anthropology (Baywood Publishing) Abstracts on Hygiene & Communicable Diseases (CABI) Academic Search (EBSCO Publishing) Academic Search Alumni Edition (EBSCO Publishing) Academic Search Elite (EBSCO Publishing) Academic Search Premier (EBSCO Publishing) AgBiotech News & Information (CABI) AgBiotechNet (CABI) Agroforestry Abstracts (CABI) Botanical Pesticides (CABI) CAB Abstracts® (CABI) CABDirect (CABI) CSA Biological Sciences Database (ProQuest) CSA Environmental Sciences & Pollution Management Database (ProQuest) CSA Virology & AIDS Abstracts (ProQuest) Current Contents: Clinical Medicine (Thomson Reuters) Dairy Science Abstracts (CABI) Embase (Elsevier) Global Health (CABI) Health Source Nursing/Academic (EBSCO Publishing) Helminthological Abstracts (CABI) Index Medicus/MEDLINE (NLM) Index Veterinarius (CABI) Journal Citation Reports/Science Edition (Thomson Reuters) Leisure, Recreation & Tourism Abstracts (CABI) MEDLINE/PubMed (NLM) Pig News & Information (CABI) Poultry Abstracts (CABI) Protozoological Abstracts (CABI) PubMed Dietary Supplement Subset (NLM) Research Alert (Thomson Reuters) Review of Aromatic & Medicinal Plants (CABI) Review of Medical & Veterinary Mycology (CABI) Rural Development Abstracts (CABI) Science Citation Index (Thomson Reuters) Science Citation Index Expanded (Thomson Reuters) Tropical Diseases Bulletin (CABI) Veterinary Bulletin (CABI) JOURNAL OF VIRAL HEPATITIS (2010)
Schizophrenia, brain disease and meta-analyses: Integrating the pieces and testing Fusar-Poli's hypothesis Dias, Alvaro Machado; Lopo Queiroz, Artur Trancoso; Maracaja-Coutinho, Vinicius Article ISI MEDICAL HYPOTHESES (2010)
Schizophrenia, brain disease and meta-analyses: Integrating the pieces and testing Fusar-Poli’s hypothesis Dias, Álvaro M.; Queiroz, Artur T. L.; Maracaja-Coutinho, Vinícius Article ADONIS BIOSIS Elsevier BIOBASE Chemical Abstracts Current Contents/Life Sciences Medical Documentation Service Index Medicus Reference Update Research Alert SCISEARCH Science Citation Index UMI Microfilms EMBASE/Excerpta Medica Russian Academy of Sciences MEDICAL HYPOTHESES (2010)
The Role of Neuregulin 1 in Schizophrenia: A Bioinformatics Approach Dias, Álvaro M.; Queiroz, Artur T. L.; Maracaja-Coutinho, Vinícius Article ADONIS BIOSIS Elsevier BIOBASE Chemical Abstracts Current Contents/Life Sciences Medical Documentation Service Index Medicus Reference Update Research Alert SCISEARCH Science Citation Index UMI Microfilms EMBASE/Excerpta Medica Russian Academy of Sciences Nature Precedings (2009)
A bioinformática como instrumento de inserção digital e difusão da biotecnologia Padilha, Itácio Q. de M.; Durbano, João Paulo D. M.; Martins, Amely B.; Almeida, Renata dos S.; Macarajá-Coutinho, Vinicius R. H.; Araújo, Demetrius A. M. de Article Revista Eletrônica Extensão Cidadã (2008)


Transcriptomics at the single cell level and human diseases: opportunities and challenges in data processing and analysis Maracaja-Coutinho, V; Severino, P; Passos, GA BookSection (2022)


Predicting RNA Families in Nucleotide Sequences Using StructRNAfinder Maracaja-Coutinho V.; Arias-Carrasco R.; Nakaya H.I.; Aliaga-Tobar V. BookWhole ISI SCOPUS NEISSERIA MENINGITIDIS (2019)


Avaliação de Desempenho em Bioinformática: Estudo de caso de sistemas computacionais para a investigação de microRNAs Aguiar, Rosana R.; Ambrosio, Leandro A.; Sepúlveda-Hermosilla, Gonzalo; Maracaja-Coutinho, Vinicius; Paschol, Alexandre R. ConferencePaper (2015)


Advanced Center for Chronic Diseases - ACCDiS Lavandero S.; Maracaja-Coutinho, Vinicius; Ferreccio C.; Quest, A; Corvalan, A; KOGAN, MARCELO; Cortes, Sandra; Garcia-Huidobro, L.; Cifuentes M.; Castro, Pablo; Verdejo, Hugo Proyecto (2023)
Epitranscriptomic regulation of competing endogenous RNA networks in cardiac fibroblasts associated with heart failure with preserved ejection fraction Maracaja-Coutinho, Vinicius Proyecto (2021)
RCAN1 trisomy and the control of PINK1 levels in the survival of human Down's syndrome induced pluripotent stem cells (iPSC) and iPSC-derived cardiomyocytes FONDECYT (1190743) Proyecto 2019-2023 Coinvestigador(a)
Establecimiento de una línea base de las características genómicas, toxicológicas y ciclos temporales de la marea roja y de las microalgas tóxicas presentes en la costa de la Región de los Ríos para el anticipo de políticas públicas CORFO (16BPE-62321) Proyecto 2017-2019 Coinvestigador(a)
Instalación y desarrollo del área de investigación y docencia en Bioinformática=> Estudio RNAs no codificantes posicionalmente conservados y su rol en las enfermedades cardiacas a través de la integración de datos multiómicos PAI (PAI-791700) Proyecto 2017-2020 Inv. Principal
BIOINFORMATICS APPROACHES AND ITS APPLICATION ON THE IDENTIFICATION, EVOLUTION AND FUNCTIONAL ASSIGNATION OF NON-CODING RNAS FONDECYT (11161020) Proyecto 2016-2019 Inv. Responsable
Dodo Biotech Crowdfunding CORFO - Programa SSAF Etapa 1 (4SSAF-27061-9) Proyecto 2015-2016 Director(a)
Dodo Scientific Crowdfunding - SSAF/CORFO Maracaja-Coutinho, Vinicius Proyecto (2015)
Generating a reference dataset for non-redundant sequences and for orthologous groups of non-coding RNAs in 50 thousand species Fondo de Investigación Universidad Mayor - FIDUM (100913) Proyecto 2015-2017 Inv. Principal
Generating a reference dataset for non-redundant sequences and for orthologous groups of non-coding RNAs in 50 thousand species Maracaja-Coutinho, Vinicius; Arias-Carrasco, Raul Proyecto (2015)
A Reciprocal Approach to Promoting Study Abroad in STEM: Montclair State University Molina, Carlos; Maracaja-Coutinho, Vinicius Proyecto (2014)
A Reciprocal Approach to Promoting Study Abroad in STEM=> Montclair State University, USA and Universidad Mayor, Chile Partners of America (-) Proyecto 2014-2015 Coinvestigador(a)
Computational approaches in RNomics: a data integration study Paschol, Alexandre R.; Maracaja-Coutinho, Vinicius Proyecto Universal CNPq (2014)
Computational approaches in RNomics=> a data integration study Conselho Nacional de Desenvolvimento Científico e Tecnológico - CNPq (45450520140) Proyecto 2014-2017 Coinvestigador(a)
Dodo Biotech Crowdfunding CORFO - Programa Start-Up Chile (13SUP-24578) Proyecto 2014-2014 Coinvestigador(a)
Centro FONDAP de Estudios Avanzados de Enfermedades Crónicas / ACCDiS Advanced Center for Chronic Diseases FONDAP (15130011) Proyecto 2013-2023 Investigador(a)
Development of cloud solutions for bioinformatics Maracaja-Coutinho, Vinicius Proyecto (2013)
Systems biology of long non-coding RNAs Fundação de Amparo à Pesquisa do Estado de São Paulo - FAPESP (12/19278-6) Proyecto 2013-2017 Coinvestigador(a)
Systems Biology of long non-coding RNAs Nakaya, Helder I.; Maracaja-Coutinho, Vinicius Proyecto FAPESP Jovem Pesquisador (2013)
Beagle Bioinformatics Maracaja-Coutinho, Vinicius; Gambarra-Soares, Thaise Proyecto (2012)
Beagle Bioinformatics CORFO - Programa Start-Up Chile (12SUP-13791) Proyecto 2012-2013 Inv. Responsable
NimbusGene=> integrating bioinformatics tools on the cloud SoftLayer (00001) Proyecto 2012-2013 Inv. Principal
In silico characterization and expression analysis of intronic transcripts in human and mouse Fundação de Amparo à Pesquisa do Estado de São Paulo - FAPESP (07/59542-6) Proyecto 2008-2012 Tesista
Bioinformatics approaches and its application on the identification, evolution and functional assignation of non-coding RNAs Maracaja-Coutinho, Vinicius Proyecto (0)
Dodo Scientific Crowdfunding - Start-Up Chile Cardoso, Marcelo J.; Maracaja-Coutinho, Vinicius; Gonçalves, Carlos E. Proyecto (0)

Vinicius Ramos Henriques

Associate Professor

Advanced Center for Chronic Diseases - ACCDiS

Univesidad de Chile

Santiago, Chile

Victor Aliaga

Postdoctorante

Universidad de O'Higgins

Santiago, Chile

Nicolás Saavedra

Profesor Asociado

Departamento de Ciencias Básicas

Universidad de La Frontera

Temuco, Chile

Carolina Sanchez

Assistant Professor, Faculty of Science; Principal Investigator of Advanced Genomics Laboratory; Head of DNA Sequencing Core of the Center for Genomics and Bioinformatics

Center for Genomics and Bioinformatics

Universidad Mayor

Santiago, Chile

Jesus Martinez

Investigador

Centro de Genómica Nutricional Agroacuícola

Temuco, Chile

Raúl Arias

Investigador

Universidad Tecnológica Metropolitana

Santiago, Chile

CESAR SAEZ

Associate professor

Chemical and Bioprocess Engineering

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

SANTIAGO, Chile

Mario Chiong

Profesor

Departamento de Bioquímica y Biología Molecular

Universidad de Chile

Santiago, Chile

Jorge Toledo

Investigador

Departamento de Anatomia y Biologia del Desarrollo

Universidad de Chile; Biomedical Neuroscience Institute (BNI)

Santiago, Chile

Pablo Castro

JEFE DIVISION

DIVISION ENFERMEDADES CARDIOVASCULARES

Pontificia Universidad Católica de Chile

SANTIAGO, Chile

Hugo Verdejo

Profesor Asociado

División de Enferemedades Cardiovasculares

Pontificia Universidad Católica de Chile

Santiago, Chile

PATRICIA CARVAJAL

Andrew Quest

Full Professor

Biologia Celular y Molecular

FACULTAD DE MEDICINA, UNIVERSIDAD DE CHILE

Santiago, Chile

Héctor Levipan

Profesor Asociado

Ciencias y Geografía

Universidad de Playa Ancha de Ciencias de la Educación

VALPARAISO, Chile

Jaime Figueroa

Profesor Titular

Bioquimica y Microbiologia

UNIVERSIDAD AUSTRAL DE CHILE

Valdivia, Chile

Gonzalo García

Académico

Universidad de La Serena

La Serena, Chile

Sara Cuadros

Profesor Titular

Universidad Católica del Maule

Talca, Chile

Alberto Martin

Associate professor

Centro Ciencia & Vida

Universidad San Sebastián

Santiago, Chile

Macarena Tejos

Trainee (PhD Student)

Pontificia Universidad Católica de Chile

Santiago, Chile

Gabriel Rojas

Academico

Universidad Autónoma de Chile

Talca, Chile

Wileidy Gómez

Postdoctorado

Medicina

Pontificia Universidad Católica de Chile

Santiago, Chile

Mauricio Latorre

Profesor Asociado

INGENIERIA

UNIVERSIDAD DE O'HIGGINS

Rancagua, Chile

Jose Matamala

Assistant Professor of Neurology

Department of Neurological Science

University of Chile

Santiago, Chile

Mónica Kurte

Investigador

Laboratorio de Inmunologìa

Universidad de los Andes

Santiago, Chile

ALEJANDRO CORVALAN

Principal Investigator

Hematology and Oncology

Pontificia Universidad Catolica de Chile

Santiago, Chile

Adolfo Rojas

Alvaro Elorza

FULL PROFESSOR

INSTITUTE OF BIOMEDICAL SCIENCES

UNIVERSIDAD ANDRES BELLO

Santiago, Chile

Luis Federico Batiz

Full Professor

Center for Biomedical Research and Innovation (CIIB)

Universidad de Los Andes

Santiago, Chile

SERGIO LAVANDERO

Director

Advanced Center for Chronic Diseases (ACCDiS)

UNIVERSIDAD DE CHILE, FAC CIENCIAS QUÍMICAS Y FARMACÉUTICAS

Santiago, Chile

Maroun Khoury

Professor

Faculty of Medicine

Universidad de Los Andes

santiago, Chile

Steffany Cárdenas

Asistente de investigación

Recursos Ambientales

Universidad de Tarapacá

Arica, Chile

Karina Pino

Group Leader/Associate Professor

Centro de Investigación Biomédica

Universidad de los Andes

Santiago, Chile

Juan Roa

Chair

Pathology

Pontificia Universidad Catolica de Chile

santiago, Chile

Fernando Figueroa

Director

Medicina

UNIVERSIDAD DE LOS ANDES

Santiago de Chile, Chile

Roberto Elizondo

Profesor Asistente

Departamento de Biología Celular

Universidad de Concepción

CONCEPCION, Chile

Angela Court

Asistente de Investigación

Medicina Nanoregenerativa

Universidad de Los Andes

Santiago, Chile

Maria Matus

Principal Investigator

Fundacion Ciencia & Vida

Santiago, Chile

Patricio Manque

VICE PRESIDENT FOR RESEARCH AND FULL PROFESSOR

UNIVERSIDAD MAYOR

Santiago, Chile

Cristian Cortez

Profesor Asociado

Pontificia Universidad Católica de Valparaíso

Valparaíso, Chile

Víctor Polanco

Vicerrector de Investigación, Creación Artística y Doctorado

Vicerrectoría de Investigación, Creación Artística y Doctorado

Universidad Finis Terrae

Santiago, Chile

Vinicius Ramos Henriques Maracaja Coutinho

Líneas de Investigación

Educación

Bioinformatics, UNIVERSIDADE DE SAO PAULO. Brasil, 2013

Biological Sciences, UNIVERSIDADE FEDERAL DA PARAIBA. Brasil, 2006

Experiencia Académica

Assistant Professor Full Time

Assistant Professor Full Time

Associate Professor Full Time

Visiting Professor Other

Visiting Researcher Other

Visiting Researcher Other

Visiting Researcher Other

Experiencia Profesional

Fundador Other

Formación de Capital Humano

Difusión y Transferencia

Premios y Distinciones

Parallella University Program - PUP

2nd Austral BIO Challenge

GBR GapSummit Biotech Leader of Tomorrow

3rd Place Poster Award. ISCB Latin America Conference

1st Place Poster Award. Copec-UC “Big Data” Conference

Start-Up Chile Recognition Program

Fundacity Entrepreneur of the Week

Honorable Mention: Databases & Data Integration, Text Mining and Information Extraction

Prêmio Elo Cidadão

Prêmio Elo Cidadão

2nd Best Place Poster Award. X-Meeting 2005

Article (62)

BookSection (1)

BookWhole (1)

ConferencePaper (1)

Proyecto (25)

RCAN1 trisomy and the control of PINK1 levels in the survival of human Down's syndrome induced pluripotent stem cells (iPSC) and iPSC-derived cardiomyocytes

Establecimiento de una línea base de las características genómicas, toxicológicas y ciclos temporales de la marea roja y de las microalgas tóxicas presentes en la costa de la Región de los Ríos para el anticipo de políticas públicas

Instalación y desarrollo del área de investigación y docencia en Bioinformática=> Estudio RNAs no codificantes posicionalmente conservados y su rol en las enfermedades cardiacas a través de la integración de datos multiómicos

BIOINFORMATICS APPROACHES AND ITS APPLICATION ON THE IDENTIFICATION, EVOLUTION AND FUNCTIONAL ASSIGNATION OF NON-CODING RNAS

Dodo Biotech Crowdfunding

Generating a reference dataset for non-redundant sequences and for orthologous groups of non-coding RNAs in 50 thousand species

A Reciprocal Approach to Promoting Study Abroad in STEM=> Montclair State University, USA and Universidad Mayor, Chile

Computational approaches in RNomics=> a data integration study

Dodo Biotech Crowdfunding

Centro FONDAP de Estudios Avanzados de Enfermedades Crónicas / ACCDiS Advanced Center for Chronic Diseases

Systems biology of long non-coding RNAs

Beagle Bioinformatics

NimbusGene=> integrating bioinformatics tools on the cloud

In silico characterization and expression analysis of intronic transcripts in human and mouse