Man

Vinicius Ramos Henriques Maracaja Coutinho

Profesor Asistente

Univesidad de Chile

Santiago, Chile

Líneas de Investigación


Aplicación, desarrollo e integración de distintos abordajes bioinformáticos y sets de datos masivos (genomas, ESTs, microarrays, NGS, ChIP-seq) con el objetivo de comprender la función, evolución y asociación con enfermedades de RNAs no codificantes.

Educación

  •  Bioinformática, UNIVERSIDADE DE SAO PAULO. Brasil, 2013
  •  Ciencias Biológicas, UNIVERSIDADE FEDERAL DA PARAIBA. Brasil, 2006

Experiencia Académica

  •   Profesor Asistente Full Time

    UNIVERSIDAD MAYOR

    Facultad de Ciencias

    Santiago, Chile

    2013 - 2017

  •   Profesor Asistente Full Time

    UNIVERSIDAD DE CHILE

    Facultad de Ciencias Químicas y Farmacéuticas

    Santiago, Chile

    2018 - A la fecha

Experiencia Profesional

  •   Fundador Other

    Beagle Bioinformatics

    Santaigo, Chile

    2013 - A la fecha

Formación de Capital Humano


- Orientación de 4 tesis de pregrado finalizadas.
- Orientación de 1 tesis de pregrado en curso.
- Orientación de 5 tesis de Magíster finalizadas.
- Orientación de 1 tesis de Magíster en curso.
- Orientación de 4 tesis de Doctorado en curso.
- Orientación de 4 tesis de Doctorado finalizadas.

- Creador y Director del Programa de Diploma Postítulo en Bioinformática y Biología Computacional, de la Facultad de Ciencias Químicas y Farmacéuticas de la Universidad de Chile, iniciado el año de 2019.

- He coordinado y participado como profesor de cátedra de diversos cursos referentes a Estadística, Programación, Genómica y Bioinformática para distintas carreras de pregrado en la Universidad de Chile y Universidad Mayor.

- He coordinado y participado como profesor de cátedra de diversos cursos referentes a Estadística, Programación, Genómica y Bioinformática para distintos programas de doctorado en la Universidad de Chile, Universidad Mayor y Universidad de La Frontera.


Difusión y Transferencia


- Durante los dos últimos años he organizado las DIB Talks - Disruptive Ideas in Biotech (www.dibtalks.com), una serie de charlas que tiene como objetivo difundir y popularizar tecnologías disyuntivas asociadas a las Biociencias.

- Desarrollo de plataforma digital para financiamiento colectivo de proyectos científicos "Dodo Scientific Crowdfunding" (www.dodofunding.com).

- Participación como expositor o organizador en distintos eventos científicos, de emprendimiento científico o difusión científica a lo largo del país.


Premios y Distinciones

  •   Parallella University Program - PUP

    Adapteva

    Estados Unidos, 2014

    Selected to be part of the Parallela University Program, from Adapteva. The goal of the project is to apply computational biology algorithms in the low cost super computer Parallella.

  •   2nd Austral BIO Challenge

    UNIVERSIDAD AUSTRAL DE CHILE

    Chile, 2014

    One of the winners of the 2nd Austral BioChallenge, from Austral Incuba / Universidad Austral de Chile.

  •   GBR GapSummit Biotech Leader of Tomorrow

    Global Biotech Revolution

    Reino Unido, 2014

    Selected one of the Leaders of Tomorrow of Biotechnology, due to my work trying to solve the gaps we current have in funding biotech projects.

  •   3rd Place Poster Award. ISCB Latin America Conference

    ISCB Latin America Conference

    Argentina, 2016

    3rd Place Poster Award. International Society for Computational Biology Latin America Conference, Buenos Aires, Argentina.

  •   1st Place Poster Award. Copec-UC “Big Data” Conference

    FUNDACION COPEC UNIVERSIDAD CATOLICA

    Chile, 2015

    2015 – 1st Place Poster Award. Copec-UC “Big Data” Conference, Santiago, Chile.

  •   Start-Up Chile Recognition Program

    CORPORACION DE FOMENTO DE LA PRODUCCION

    Chile, 2014

    Start-Up Chile Recognition Program, Start-Up Chile, Santiago, Chile.

  •   Fundacity Entrepreneur of the Week

    Fundacity

    Chile, 2013

    Fundacity Entrepreneur of the Week.

  •   Honorable Mention: Databases & Data Integration, Text Mining and Information Extraction

    Associação Brasileira de Bioinformática e Biologia Computacional

    Brasil, 2012

    Honorable Mention: Databases & Data Integration, Text Mining and Information Extraction. X-Meeting 2012, Associação Brasileira de Bioinformática e Biologia Computacional – AB3C, Campinas, Brazil.

  •   Prêmio Elo Cidadão

    Universidade Federal de Paraíba

    Chile, 2007

    Premiación por el trabajo de extensión universitaria asociada a la difusión de la Bioinformática e inserción digital de la comunidad.

  •   Prêmio Elo Cidadão

    Universidade Federal de Paraíba

    Chile, 2005

    Premiación por el trabajo de extensión universitaria asociada a la difusión de la Bioinformática e inserción digital de la comunidad.

  •   2nd Best Place Poster Award. X-Meeting 2005

    Associação Brasileira de Bioinformática e Biologia Computacional

    Chile, 2005

    2nd Best Place Poster Award. X-Meeting 2005, Associação Brasileira de Bioinformática e Biologia Computacional – AB3C, Caxambu, Brazil.


 

Article (37)

Angiotensin-(1–9) prevents cardiomyocyte hypertrophy by controlling mitochondrial dynamics via miR-129-3p/PKIA pathway
BRD4 (Bromodomain-Containing Protein 4) Interacts with GATA4 (GATA Binding Protein 4) to Govern Mitochondrial Homeostasis in Adult Cardiomyocytes
Down syndrome and alzheimer's disease: Common molecular traits beyond the amyloid precursor protein
Genome-wide analysis of in vivo CcpA binding with and without its key co-factor HPr in the major human pathogen group A Streptococcus
Human adipose-derived mesenchymal stem cell-conditioned medium ameliorates polyneuropathy and foot ulceration in diabetic BKS db/db mice
Mitochondrial transfer from MSCs to T cells induces Treg differentiation and restricts inflammatory response
Assessing the Impact of Sample Heterogeneity on Transcriptome Analysis of Human Diseases Using MDP Webtool
Long noncoding RNAs are involved in multiple immunological pathways in response to vaccination
Noncoding RNAs Databases=> Current Status and Trends.
Prediction of MicroRNAs in the Epstein-Barr Virus Reveals Potential Targets for the Viral Self-Regulation.
webCEMiTool=> Co-expression Modular Analysis Made Easy.
A regulatory RNA is involved in RNA duplex formation and biofilm regulation in Sulfolobus acidocaldarius
CEMiTool: a Bioconductor package for performing comprehensive modular co-expression analyses
Genome-wide circulating microRNA expression profiling reveals potential biomarkers for amyotrophic lateral sclerosis
Genomic positional conservation identifies topological anchor point RNAs linked to developmental loci
Long Non-Coding RNAs Responsive to Salt and Boron Stress in the Hyper-Arid Lluteno Maize from Atacama Desert
StructRNAfinder: an automated pipeline and web server for RNA families prediction
Comparative Pan-Genome Analysis of Piscirickettsia salmonis Reveals Genomic Divergences within Genogroups.
LeishDB=> a database for coding gene annotation and non-coding RNAs in Leishmania braziliensis
A Guide to Scientific Crowdfunding
A Novel Method to Predict Genomic Islands Based on Mean Shift Clustering Algorithm
miRQuest: Integration of tools on a web server for microRNA research
Complete Genome Sequence of Salmonella enterica Serovar Enteritidis Bacteriophage f18SE, Isolated in Chile
Deep Sequencing Reveals the Complete Genome and Evidence for Transcriptional Activity of the First Virus-Like Sequences Identified in Aristotelia chilensis (Maqui Berry)
Draft Genome of Chilean Honeybee (Apis mellifera) Gut Strain Lactobacillus kunkeei MP2
Draft Genome of Chilean Honeybee (Apis mellifera) Gut Strain Lactobacillus kunkeei MP2.
Draft genome sequence of the virulent strain AUSTRAL-005 of Piscirickettsia salmonis, the etiological agent of piscirickettsiosis (SPS)
Draft Genome Sequence of Virulent Strain AUSTRAL-005 of Piscirickettsia salmonis, the Etiological Agent of Piscirickettsiosis.
Expression analysis and in silico characterization of intronic long noncoding RNAs in renal cell carcinoma: emerging functional associations
Non-coding transcription characterization and annotation: A guide and web resource for non-coding RNA databases
Long noncoding intronic RNAs are differentially expressed in primary and metastatic pancreatic cancer
Non-coding RNAs in schistosomes: an unexplored world
Relation of pretreatment sequence diversity in NS5A region of HCV genotype 1 with immune response between pegylated-INF/ribavirin therapy outcomes
Schizophrenia, brain disease and meta-analyses: Integrating the pieces and testing Fusar-Poli's hypothesis
Schizophrenia, brain disease and meta-analyses: Integrating the pieces and testing Fusar-Poli’s hypothesis
The Role of Neuregulin 1 in Schizophrenia: A Bioinformatics Approach
A bioinformática como instrumento de inserção digital e difusão da biotecnologia

ConferencePaper (1)

Avaliação de Desempenho em Bioinformática: Estudo de caso de sistemas computacionais para a investigação de microRNAs

Proyecto (24)

Epitranscriptomic regulation of competing endogenous RNA networks in cardiac fibroblasts associated with heart failure with preserved ejection fraction
RCAN1 trisomy and the control of PINK1 levels in the survival of human Down's syndrome induced pluripotent stem cells (iPSC) and iPSC-derived cardiomyocytes
Establecimiento de una línea base de las características genómicas, toxicológicas y ciclos temporales de la marea roja y de las microalgas tóxicas presentes en la costa de la Región de los Ríos para el anticipo de políticas públicas
Instalación y desarrollo del área de investigación y docencia en Bioinformática=> Estudio RNAs no codificantes posicionalmente conservados y su rol en las enfermedades cardiacas a través de la integración de datos multiómicos
BIOINFORMATICS APPROACHES AND ITS APPLICATION ON THE IDENTIFICATION, EVOLUTION AND FUNCTIONAL ASSIGNATION OF NON-CODING RNAS
Dodo Biotech Crowdfunding
Dodo Scientific Crowdfunding - SSAF/CORFO
Generating a reference dataset for non-redundant sequences and for orthologous groups of non-coding RNAs in 50 thousand species
Generating a reference dataset for non-redundant sequences and for orthologous groups of non-coding RNAs in 50 thousand species
A Reciprocal Approach to Promoting Study Abroad in STEM: Montclair State University
A Reciprocal Approach to Promoting Study Abroad in STEM=> Montclair State University, USA and Universidad Mayor, Chile
Computational approaches in RNomics: a data integration study
Computational approaches in RNomics=> a data integration study
Dodo Biotech Crowdfunding
Centro FONDAP de Estudios Avanzados de Enfermedades Crónicas / ACCDiS Advanced Center for Chronic Diseases
Development of cloud solutions for bioinformatics
Systems biology of long non-coding RNAs
Systems Biology of long non-coding RNAs
Beagle Bioinformatics
Beagle Bioinformatics
NimbusGene=> integrating bioinformatics tools on the cloud
In silico characterization and expression analysis of intronic transcripts in human and mouse
Bioinformatics approaches and its application on the identification, evolution and functional assignation of non-coding RNAs
Dodo Scientific Crowdfunding - Start-Up Chile
41
Vinicius Ramos Henriques

Profesor Asistente

Advanced Center for Chronic Diseases - ACCDiS

Univesidad de Chile

Santiago, Chile

4
Victor Aliaga

Investigador Asociado

Universidad de Chile

Santiago, Chile

2
Carolina Sanchez

Assistant Professor, Faculty of Science; Principal Investigator of Advanced Genomics Laboratory; Head of DNA Sequencing Core of the Center for Genomics and Bioinformatics

Center for Genomics and Bioinformatics

Universidad Mayor

Santiago, Chile

1
Steffany Cárdenas

Asistente de investigación

Recursos Ambientales

Universidad de Tarapacá

Arica, Chile

1
Jose Matamala

Assistant Professor of Neurology

Department of Neurological Science

University of Chile

Santiago, Chile

1
Raúl Arias

Investigador

Universidad Tecnológica Metropolitana

Santiago, Chile

1
Luis Federico Batiz

Full Professor

Center for Biomedical Research and Innovation (CIIB)

Universidad de Los Andes

Santiago, Chile

1
Sergio Lavandero

Director

Advanced Center for Chronic Diseases (ACCDiS)

UNIVERSIDAD DE CHILE, FAC CIENCIAS QUÍMICAS Y FARMACÉUTICAS

Santiago, Chile

1
Maroun Khoury

A/Professor

Faculty of Medicine

Universidad de Los Andes

santiago, Chile

1
Mónica Kurte

Investigador

Laboratorio de Inmunologìa

Universidad de los Andes

Santiago, Chile

1
Karina Pino

Group Leader/Associate Professor

Centro de Investigación Biomédica

Universidad de los Andes

Santiago, Chile

1
Juan Roa

Chair

Pathology

Pontificia Universidad Catolica de Chile

santiago, Chile

1
Fernando Figueroa

Director

Medicina

UNIVERSIDAD DE LOS ANDES

Santiago de Chile, Chile

1
Roberto Elizondo

Profesor Asistente

Departamento de Biología Celular

Universidad de Concepción

CONCEPCION, Chile

1
Angela Court

Asistente de Investigación

Medicina Nanoregenerativa

Universidad de Los Andes

Santiago, Chile

1
Maria Matus

Principal Investigator

Fundacion Ciencia & Vida

Santiago, Chile

1
Patricio Manque

VICE PRESIDENT FOR RESEARCH AND FULL PROFESSOR

UNIVERSIDAD MAYOR

Santiago, Chile

1
Mauricio Latorre

Profesor Asociado

INGENIERIA

UNIVERSIDAD DE O'HIGGINS

Rancagua, Chile

1
Wileidy Gómez

Postdoctorado

Ciencias Biologicas

Pontificia Universidad Católica de Chile

Santiago, Chile