Man

Jorge Hernan Valdes Anabalon

I

UNIVERSIDAD MAYOR

Santiago, Chile

Líneas de Investigación


GENOMICS; BIOINFORMATICS; BIOTECHNOLOGY

Educación

  •  BIOTECHNOLOGY, UNIVERSIDAD ANDRES BELLO. Chile, 2011

Experiencia Académica

  •   Director Full Time

    UNIVERSIDAD MAYOR

    Facultad de Ciencias

    Santiago, Chile

    2016 - A la fecha

Experiencia Profesional

  •   Director Full Time

    Fraunhofer Chile Research

    Santiago, Chile

    2011 - 2016


 

Article (30)

Comparative genomics sheds light on transcription factor-mediated regulation in the extreme acidophilic Acidithiobacillia representatives

Sepúlveda-Rebolledo, Pedro; González-Rosales, Carolina; Dopson, Mark; Perez-Rueda, Ernesto; HOLMES, DAVID SALWAY; Valdés, Jorge H.

Article SCOPUS
RESEARCH IN MICROBIOLOGY  (2023)

Mobile genetic elements drive the multidrug resistance and spread of Salmonella serotypes along a poultry meat production line

Kruger, Gabriel I.; Pardo-Este, Coral; Zepeda, Phillippi; Olivares-Pacheco, Jorge; Galleguillos, Nicolas; Suarez, Marcia; Castro-Severyn, Juan; Alvarez-Thon, Luis; Tello, Mario; Valdes, Jorge H.; Saavedra, Claudia P.

Article ISI
Frontiers in Microbiology  (2023)

Towards Understanding the Role of Microstructured Edible Scaffolds for Cultured Meat Production

Bezjak, Dragica; Orellana, Nicole; Valdes, Jorge H.; Corrales, Tomas; Acevedo, Cristian A.

Article ISI
FOOD AND BIOPROCESS TECHNOLOGY  (2023)

Integrative Genomics Sheds Light on Evolutionary Forces Shaping the Acidithiobacillia Class Acidophilic Lifestyle

Gonzalez-Rosales, Carolina; Vergara, Eva; Dopson, Mark; Valdes, Jorge H.; Holmes, David S.

Article ISI
Frontiers in Microbiology  (2022)

Draft Genome Sequence of Bacillus safensis RP10, Isolated from Soil in the Atacama Desert, Chile

Strahsburger E, Zapata F, Pedroso I, Fuentes D, Tapia P, Ponce R, McClelland M, Valdes J

Article SCOPUS
MICROBIOLOGY RESOURCE ANNOUNCEMENTS  (2019)

Non-lysosomal Activation in Macrophages of Atlantic Salmon (Salmo salar) After Infection With Piscirickettsia salmonis

Perez-Stuardo, D; Morales-Reyes, J; Tapia, S; Ahumada, DE; Espinoza, A; Soto-Herrera, V; Brianson, B; Ibaceta, V; Sandino, AM; Spencer, E; Vallejos-Vidal, E; Reyes-Lopez, FE; Valdes, J; Reyes-Cerpa, S

Article
FRONTIERS IN IMMUNOLOGY  (2019)

Draft genome sequence of Exiguobacterium aurantiacum strain PN47 isolate from saline ponds, known as Salar del Huasco, located in the Altiplano in the North of Chile

Strahsburger, Erwin; Zapata, Felipe; Pedroso, Inti; Fuentes, Derie; Tapia, Paz; Ponce, Raul; Valdes, Jorge

Article ISI SCOPUS
BRAZILIAN JOURNAL OF MICROBIOLOGY  (2018)

Draft genomes and reference transcriptomes extend the coding potential of the fish pathogen Piscirickettsia salmonis

Millar, Angela D.; Tapia, Paz; Gomez, Fernando A.; Marshall, Sergio H; Fuentes, Derie E.; Valdes, Jorge H.

Article ISI SCOPUS
ELECTRONIC JOURNAL OF BIOTECHNOLOGY  (2018)

A draft genome sequence of Pseudomonas veronii R4: a grapevine (Vitis vinifera L.) root-associated strain with high biocontrol potential

Montes, C; Altimira, F; Canchignia, H; Castro, A; Sanchez, E; Miccono, M; Tapia, E; Sequeida, A; Valdés, J; Tapia, P; Gonzalez, C; Prieto, H

Article ISI SCOPUS
STANDARDS IN GENOMIC SCIENCES  (2016)

Bioinformatic Analyses of Unique (Orphan) Core Genes of the Genus Acidithiobacillus: Functional Inferences and Use As Molecular Probes for Genomic and Metagenomic/Transcriptomic Interrogation

González, Carolina; Lazcano, Marcelo; Valdés, Jorge; Holmes, David S.

Article ISI SCOPUS
FRONTIERS IN MICROBIOLOGY  (2016)

Draft Genome Sequence of a Multi-Metal Resistant Bacterium Pseudomonas putida ATH-43 Isolated from Greenwich Island, Antarctica

Fernanda Rodríguez-Rojas, Paz Tapia, Eduardo Castro-Nallar, Agustina Undabarrena, Pablo Muñoz-Díaz, Mauricio Arenas-Salinas, Waldo Díaz-Vásquez, Jorge Valdés, Claudio Vásquez

Article ISI SCOPUS
FRONTIERS IN MICROBIOLOGY  (2016)

Draft genome sequence and transcriptome analysis of the wine spoilage yeast Dekkera bruxellensis LAMAP2480 provides insights into genetic diversity, metabolism and survival

Valdés J.; Tapia, P; Cepeda, V.; Varela, J; GODOY, L.; Cubillos, F. A.; Silva, E.; Martínez C; Ganga, M.A

Article SCOPUS
FEMS MICROBIOLOGY LETTERS  (2015)

Metagenomic analysis reveals adaptations to a cold-adapted lifestyle in a low-temperature acid mine drainage stream

Liljeqvist M; Ossandon FJ; González C; Rajan, S; Stell, A; Valdés J.; Holmes, DS; Dopson, M

Article ISI SCOPUS
FEMS Microbiology Ecology  (2015)

Genetic variability of psychrotolerant Acidithiobacillus ferrivorans revealed by (meta)genomic analysis

González C; Yanquepe M; Cardenas, JP; Valdés J.; Quatrini, R; Holmes, DS; Dopson, M

Article ISI SCOPUS
RESEARCH IN MICROBIOLOGY  (2014)

Architecture and Gene Repertoire of the Flexible Genome of the Extreme Acidophile Acidithiobacillus caldus

Acuña LG; Cardenas, JP; Covarrubias PC; Haristoy JJ; Flores R.; Núñez H; Riadi G.; Shmaryahu, A; Valdés J.; Dopson, M; Rawlings DE; Banfield, JF; Holmes, DS; Quatrini, R

Article ISI SCOPUS
PLOS ONE  (2013)

Draft Genome of the Psychrotolerant Acidophile Acidithiobacillus ferrivorans SS3

Liljeqvist M; Valdés J.; Holmes, DS; Dopson, M

Article ISI SCOPUS
Journal of Bacteriology  (2011)

Draft Genome Sequence of the Extremely Acidophilic Biomining Bacterium Acidithiobacillus thiooxidans ATCC 19377 Provides Insights into the Evolution of the Acidithiobacillus Genus

Valdés J.; Ossandon F; Quatrini, R; Dopson, M; Holmes, DS

Article ISI SCOPUS
Journal of Bacteriology  (2011)

Sulfur metabolism in the extreme acidophile Acidithiobacillus caldus

Mangold S.; Valdés J.; Holmes, DS; Dopson, M

Article ISI SCOPUS
Frontiers in Microbiology  (2011)

Comparative genomics begins to unravel the ecophysiology of bioleaching

Valdés J.; Cardenas, JP; Quatrini, R; Esparza M.; Osorio H.; Duarte F.; Lefimil, C; sepulveda, r; Jedlicki, E; Holmes, DS

Article ISI SCOPUS
Hydrometallurgy  (2010)

Draft Genome Sequence of the Extremely Acidophilic Bacterium Acidithiobacillus caldus ATCC 51756 Reveals Metabolic Versatility in the Genus Acidithiobacillus

Valdés J.; Quatrini, R; Hallberg K; Dopson, M; Valenzuela PDT; Holmes, DS

Article ISI SCOPUS
JOURNAL OF BACTERIOLOGY  (2009)

Comparative genome analysis of Acidithiobacillus ferrooxidans, A. thiooxidans and A. caldus: Insights into their metabolism and ecophysiology

Valdés J.; Pedroso, I.; Quatrini, R; Holmes, DS

Article ISI SCOPUS
HYDROMETALLURGY  (2008)

Generation and analysis of an Eucalyptus globulus cDNA library constructed from seedlings subjected to low temperature conditions

Rasmussen-Poblete, S; Valdés J.; Gamboa, MC; Valenzuela PDT; Krauskopf, E

Article ISI SCIELO SCOPUS
ELECTRONIC JOURNAL OF BIOTECHNOLOGY  (2008)

Iron homeostasis strategies in acidophilic iron oxidizers: Studies in Acidithiobacillus and Leptospirillum

Osorio H.; Martínez V; Veloso FA; Pedroso, I.; Valdés J.; Jedlicki, E; Holmes, DS; Quatrini, R

Article ISI SCOPUS
HYDROMETALLURGY  (2008)

Preparation and Analysis of an Expressed Sequence Tag Library from the Toxic Dinoflagellate Alexandrium catenella

Uribe, P; Fuentes, D; Valdés J.; Shmaryahu, A; Zuniga, A; Holmes D; Valenzuela PDT

Article ISI SCOPUS
MARINE BIOTECHNOLOGY  (2008)

Regulation of a novel Acidithiobacillus caldus gene cluster involved in metabolism of reduced inorganic sulfur compounds

Rzhepishevska, OI; Valdés J.; Marcinkeviciene, L; Gallardo, CA; Meskys, R; Bonnefoy, V; Holmes, DS; Dopson, M

Article ISI SCOPUS
APPLIED AND ENVIRONMENTAL MICROBIOLOGY  (2007)

Generation and analysis of expressed sequence tags from Botrytis cinerea

Silva, E.; Valdés J.; Holmes D; Shmaryahu, A; Valenzuela PDT

Article ISI SCIELO SCOPUS
BIOLOGICAL RESEARCH  (2006)

Insights into the iron and sulfur energetic metabolism of Acidithiobacillus ferrooxidans by microarray transcriptome profiling

Quatrini, R; Appia-Ayme, C; Denis Y.; Ratouchniak, J; Veloso F.; Valdés J.; Lefimil, C; Silver, S; Roberto, F; Orellana O.; Denizot, F.; Jedlicki, E; Holmes D; Bonnefoy, V

Article ISI SCOPUS
HYDROMETALLURGY  (2006)

Microarray and bioinformatic analyses suggest models for carbon metabolism in the autotroph Acidithiobacillus ferrooxidans

Appia-Ayme, C; Quatrini, R; Denis Y.; Denizot, F.; Silver, S; Roberto, F; Veloso F.; Valdés J.; Cardenas, JP; Esparza M.; Orellana O.; Jedlicki, E; Bonnefoy, V; Holmes, DS

Article ISI SCOPUS
HYDROMETALLURGY  (2006)

Aspects of the predicted physiology of Acidithiobacillus ferrooxidans deduced from an analysis of its partial genome sequence

Barreto, M; Quatrini, R; Bueno, S; Arriagada C.; Valdés J.; Silver, S; Jedlicki, E; Holmes, DS

Article ISI
HYDROMETALLURGY  (2003)

Metabolic reconstruction of sulfur assimilation in the extremophile Acidithiobacillus ferrooxidans based on genome analysis

Valdés J.; Veloso F.; Jedlicki, E; Holmes D

Article ISI
BMC GENOMICS  (2003)

ConferencePaper (2)

Iron homeostasis strategies in acidophilic iron oxidizers: Comparative genomic analyses

Quatrini, R; Martínez V; Osorio H.; Veloso FA; Pedroso, I.; Valdés J.; Jedlicki, E; Holmes, DS

ConferencePaper ISI
BIOHYDROMETALLURY: FROM THE SINGLE CELL TO THE ENVIRONMENT  (2007)

Chilean effort for improving fruit quality in grapevine: A genomic approach to understanding seed formation, fruit ripening and pathogen response

Pena-Cortes, H; Cuadros A.; Ramírez I.; Valdés J.; Fichet, T; Pinto, M; Riquelme A.; González D; Gonzalez E.; Ruiz S.; Hinrichsen, P; Prieto H.; Rosales M.

ConferencePaper ISI
XXXI INTERNATIONAL HORTICULTURAL CONGRESS, IHC2022: INTERNATIONAL SYMPOSIUM ON INNOVATIVE PERENNIAL CROPS MANAGEMENT  (2005)

Proyecto (7)

Development of a genomic based selection system in poplar hybrids. A proof of concept for plant breeding programs in Chile

FONDEF (ID14I10242)

Proyecto
2015-2017
Director(a)

Molecular markers for the generation of potatoes with enhanced anthocyanin content (MoMaPo)

PCI (PCI2014)

Proyecto
2015-2018
Director(a)

Millennium Nucleus for Fungal Integrative and Synthetic Biology (FISB)

Iniciativa Cientifica Milenio (NC120043)

Proyecto
2014-2016
Inv. Principal

Determinación del potencial técnico-económico de un modelo predictivo de la calidad del vino basado en puntajes de revistas y concursos internacionales

CORFO (12IDL1-13329)

Proyecto
2012-2013
Director(a)

A COMPARATIVE GENOMICS APPROACH TO UNDERSTAND GENOMIC DIVERSITY AND PHYSIOLOGY IN PISCIRICKETTSIA SALMONIS STRAINS=> IMPLICATIONS FOR PATHOGENESIS AND SURVIVAL

FONDECYT (11110434)

Proyecto
2011-2014
Inv. Responsable

Programa de Atracción de Centros de Excelencia Internacional para la Competitividad InnovaChile

CORFO (09CEII-6991)

Proyecto
2011-2021
Inv. Principal

Prediction and preliminar validation of metabolic and transcriptional regulatory networks in the extreme acidophile Acidithiobacillus ferrooxidans

DI-UNAB (15-06/I)

Proyecto
2007-2008
Director(a)

Review (2)

Lessons from the genomes of extremely acidophilic bacteria and archaea with special emphasis on bioleaching microorganisms

Cardenas, JP; Valdés J.; Quatrini, R; Duarte F.; Holmes, DS

Review ISI SCOPUS
Applied Microbiology and Biotechnology  (2010)

Acidithiobacillus ferrooxidans metabolism: from genome sequence to industrial applications

Valdés J.; Pedroso, I.; Quatrini, R; Dodson RJ; Tettelin H; Blake R; Eisen JA; Holmes, DS

Review ISI SCOPUS
BMC GENOMICS  (2008)

33
Jorge Valdes

I

CENTRO DE GENOMICA Y BIOINFORMATICA

UNIVERSIDAD MAYOR

Santiago, Chile

22
David Holmes

Head, Laboratory of Bioinformatics and Genome Biology

Center for Bioinformatics and Genome Biology

FUNDACION CIENCIA & VIDA

Santiago, Chile

12
Raquel Quatrini

Research Associate

Fundación Ciencia & Vida

Santiago, Chile

5
Paz Tapia

Ingeniera en Bioinformatica

Laboratorio Biomedico

Instituto de Salud Publica

Santiago, Chile

5
Inti Pedroso

Profesor Asistente

Facultad de Ciencias

Universidad Mayor

Santiago, Chile

5
Juan Cardenas

Assistant Professor

Universidad Mayor de Chile

Santiago, Chile

4
Pablo Valenzuela

Founder and Scientific Director

Fundación Ciencia & Vida

Santiago, Chile

3
Héctor Osorio

Postdoctorado

Departamento de Biología

Universidad de Santiago de Chile

Santiago, Chile

2
Derie Fuentes

Director

Center For Systems Biotechnology

Universidad Andrés Bello

Santiago, Chile

2
Humberto Prieto

Investigador

Instituto Investigaciones Agropecuarias

Santiago, Chile

2
Carolina González

Post Doctoral Fellow

Department of Biology and Environmental Science

Linnaeus University

Kalmar, Suecia

2
Claudia Lefimil

Profesor Asistente

Instituto de Investigación en Ciencias odontológicas

UNIVERSIDAD DE CHILE

Santiago, Chile

1
Eduardo Tapia

Investigador Protección Vegetal

Sanidad Vegetal

Instituto de Investigaciones Agropecuarias

Santiago, Chile

1
Pablo Muñoz

Docente

Ciencias básicas

Universidad San Sebastián

Santiago, Chile

1
Fabiola Altimira

Investigador

Sanidad Vegetal

Instituto de Investigaciones Agropecuarias, INIA-La Platina

Santiago, Chile

1
Marlén Barreto

Profesor asociado

UNIVERSIDAD AUTONOMA DE CHILE

Santiago de Chile, Chile

1
Felipe Zapata

Investigador científico

Acuicultura y ecosistemas marinos

Fraunhofer Chile Research

Huechuraba, Chile

1
Angela Millar

Investigadora Líder

Facultad de Ciencias de la Vida

Universidad Andrés Bello

PUERTO MONTT, Chile

1
Paulo Covarrubias

Profesional

Genética Molecular

Instituto de Salud Pública

Santiago, Chile

1
Erwin Strahsburger

Instructor Professor

Universidad Arturo Prat

Iquique, Chile

1
RODRIGO FLORES

Investigador

Biología Celular y Molecular

Universidad de Chile

Macul, Chile

1
Sergio Marshall

PROFESSOR

BIOLOGY INSTITUTE

PONTIFICIA UNIVERSIDAD CATÓLICA DE VALPARAÍSO

Valparaíso, Chile

1
Fernanda Rodríguez

Investigadora Postdoctoral

CEA

Universidad de Playa Ancha de Ciencias de la Educación

Viña del mas, Chile

1
Alejandro Riquelme

Docente

Facultad de Ciencias Forestales y de la Conservacion de la Naturaleza

Universidad deChile

Santiago, Chile

1
Gonzalo Riadi

Assistant Professor

Bioinformatics

Universidad de Talca

Talca, Chile

1
Claudio Martinez

Profesor Titular

Departamento de Ciencia y Tecnología de Alimentos

Universidad de Santiago de Chile

Santiago, Chile

1
Mauricio Arenas

Profesor Asistente

Bioinformática

UNIVERSIDAD DE TALCA

talca, Chile

1
Francisco Cubillos

Investigador Asociado

Departamento de Biologia

Universidad de Santiago de Chile

Santiago, Chile

1
Claudia Saavedra

Full Professor

Departmento de Ciencias de la Vida

UNIVERSIDAD ANDRÉS BELLO

Santiago, Chile

1
Eduardo Castro

Professor

Departamento de Microbiología

Universidad de Talca

Talca, Chile

1
Thomas Fichet

Director

Produccion Agricola

Universidad de Chile

Santiago , Chile

1
Liliana Godoy

Profesor Asociado

Fruticultura y Enología

Pontificia Universidad Católica de Chile

Santiago, Chile

1
Mario Tello

Académico

Biología

Universidad de Santiago de Chile

Santiago, Chile

1
Evelyn Silva

Jefa Nacional de Innovación

Dirección I+D

INIA

Santiago, Chile

1
Maria de los Angeles Miccono

Candidata a doctor

Plant Sciences

University of California Davis

Davis, Estados Unidos

1
MARIA GANGA

academico jornada completa

Departamento en Ciencia y Tecnologia de los Alimentos

UNIVERSIDAD DE SANTIAGO DE CHILE

Santiago, Chile

1
Juan Castro

Post-Doctorante

Universidad Católica del Norte

Antofagasta, Chile

1
Patricio Hinrichsen

Investigador

INIA CENTRO REGIONAL LA PLATINA

Santiago, Chile

1
Simón Ruiz

Académico Jornada Completa

Instituto de Ciencias Biologicas

UNIVERSIDAD DE TALCA

Talca, Chile

1
Manuel Pinto

ACADÉMICO

INSTITUTO DE CIENCIAS AGRONOMICAS Y VETERINARIAS

Universidad de O'Higgins

San Fernando, Chile

1
Harold Nuñez

PostDoc

FUNDACIÓN CIENCIA PARA LA VIDA

Santiago, Chile

1
Erwin Krauskopf

Profesor Asociado

Ciencias Biologicas

UNIVERSIDAD ANDRES BELLO

Santiago, Chile

1
Omar Orellana

Profesor Titular

Programa de Biología Celular y Molecular

FACULTAD DE MEDICINA, UNIVERSIDAD DE CHILE

Santiago, Chile

1
Susan Bueno

Profesor Asociado

Genética Molecular y Microbiología

PONTIFICIA UNIVERSIDAD CATOLICA DE CHILE

Santiago, Chile

1
Tomas Corrales

Profesor Auxiliar

Fisica

UNIVERSIDAD TECNICA FEDERICO SANTA MARIA

Valparaiso, Chile

1
Coral Pardo

Investigador postdoctoral

Universidad Católica del Norte

antofagasta, Chile