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Eduardo Felipe Castro Nallar

Associate Professor

Universidad de Talca

Talca, Chile

Microbial Ecology; Metagenomics; High-Throughput Sequencing; Bioinformatics and Computational Biology; Population Genetics and Evolution

Science and Humanities, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2001
Biochemistry, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2006
PhD in Biological Sciences, GEORGE WASHINGTON UNIVERSITY. Estados Unidos, 2015
Biochemistry, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2007

Associate Professor Full Time

UNIVERSIDAD ANDRES BELLO

Facultad de Ciencias de la Vida

Santiago, Chile

2015 - 2022
Adjunct Researcher Part Time

GEORGE WASHINGTON UNIVERSITY

Milken School of Public Health

Washington, DC, Estados Unidos

2016 - At present
Associate Professor Full Time

UNIVERSIDAD DE TALCA

Facultad de Ciencias de la Salud

Talca, Chile

2022 - At present

Teaching Assistant

Brigham Young University

Estados Unidos

2011 - 2011
Jefe de Laboratorio

Diagnotec

Chile

2007 - 2009
Asistente de investigación

Universidad de Chile

Chile

2007 - 2007
Teaching Assistant

Brigham Young University

Estados Unidos

2012 - 2012
Tesista pregrado

Universidad de Santiago de Chile

Chile

2006 - 2006
Chief Science Officer

Aperiomics

Estados Unidos

2014 - 2015
Consultor

Ictiobiotech

Chile

2014 - 2015
Profesor Investigador Full Time

Universidad Andrés Bello

Chile

2015 - 2022

Technological internships: Identification and Detection tools for Fish Alphaviruses.

CORPORACION DE FOMENTO DE LA PRODUCCION

Chile, 2009

Grant code 09PTEC-5241. Grant awarded by Corporation to the Promotion of Production (Corfo, www.corfo.cl).
Bicentennial Fellowship for International PhD studies.

COMISION NACIONAL DE INVESTIGACION CIENTIFICA Y TECNOLOGICA

Chile, 2009

Fellowship awarded by the National Council for Science and Technology of Chile (CONICYT, www.conicyt.cl).
Brigham Young University mentoring award.

BRIGHAM YOUNG UNIVERSITY

Estados Unidos, 2011

Brigham Young University mentoring award.
Brigham Young University graduate fellowship award.

BRIGHAM YOUNG UNIVERSITY

Chile, 2012

Brigham Young University graduate fellowship award.
Entrepreneurial Lead in NSF I Corps program

Next-Gen Diagnostics

Chile, 2013

Entrepreneurial Lead in NSF I Corps program. Next-Gen Diagnostics.
Top 100 most influential young individuals in Chile.

DIARIO EL MERCURIO

Chile, 2014

Top 100 most influential young individuals in Chile. El Mercurio.
MIT Technology Review innovators under 35 Chile.

MASSACHUSETTS INSTITUTE OF TECHNOLOGY

Estados Unidos, 2016

MIT Technology Review innovators under 35 Chile.
UC Davis Chile Fellow.

UC Davis Chile

Chile, 2017

UC Davis Chile Fellow.
Best Young Researcher 2017.

UNIVERSIDAD ANDRES BELLO

Chile, 2018

Best Young Researcher 2017. Universidad Andrés Bello.


Characterization of the oral mycobiome of Portuguese with allergic rhinitis and asthma Article ISI CURRENT RESEARCH IN MICROBIAL SCIENCES (2024)
Detection of SARS-CoV-2 in Wastewater Associated with Scientific Stations in Antarctica and Possible Risk for Wildlife Barriga, Gonzalo P.; Neira, Victor Article ISI MICROORGANISMS (2024)
Fungal endophyte symbionts enhance plant adaptation in Antarctic habitats Barrera, Andrea Article ISI PHYSIOLOGIA PLANTARUM (2024)
Microbiome alterations are associated with apolipoprotein E mutation in Octodon degus and humans with Alzheimer's disease Cleary, David; Cogram, Patricia Article ISI ISCIENCE (2024)
Occurrence and diffusive air-seawater exchanges of organochlorine pesticides (OCPs) and polychlorinated biphenyls (PCBs) in Fildes Bay, King George Island, Antarctica Giesecke, Ricardo; Perez-Paradal, Andres; Chiang, Gustavo; Nash, Susan Bengtson; Pulgar, Jose; Pozo, Karla; Pribylova, Petra P.; Martinik, Jakub Article ISI SCIENCE OF THE TOTAL ENVIRONMENT (2024)
Pediatric urinary tract infections caused by poultry-associated <i>Escherichia coli</i> Aziz, Maliha; Davis, Gregg S.; Park, Daniel E.; Sariya, Sanjeev; Wang, Yashan; Zerbonne, Sarah; Nordstrom, Lora; Weaver, Brett; Statham, Sally; Campos, Joseph; et al. Article ISI MICROBIOLOGY SPECTRUM (2024)
The nasal mycobiome of individuals with allergic rhinitis and asthma differs from that of healthy controls in composition, structure and function Article ISI FRONTIERS IN MICROBIOLOGY (2024)
A First Insight into the Microbial and Viral Communities of Comau Fjord-A Unique Human-Impacted Ecosystem in Patagonia (42° S) Article ISI MICROORGANISMS (2023)
Characterization of the upper respiratory tract microbiota in Chilean asthmatic children reveals compositional, functional, and structural differences Reynaldos-Grandon, Katiuska L. Article ISI FRONTIERS IN ALLERGY (2023)
Continuous bioreactors enable high-level bioremediation of diesel-contaminated seawater at low and mesophilic temperatures using Antarctic bacterial consortia: Pollutant analysis and microbial community composition Article ISI ENVIRONMENTAL POLLUTION (2023)
Exploring the Influence of Small-Scale Geographical and Seasonal Variations Over the Microbial Diversity in a Poly-extreme Athalosaline Wetland Leiva, Sergio Guajardo; Remonsellez Francisco; Saavedra, Claudia P. Article ISI CURRENT MICROBIOLOGY (2023)
Fecal Metagenomes and Metagenome-Assembled Genomes from the South American Sea Lion (<i>Otaria flavescens</i>) from the Comau Fjord (42°S), Patagonia Bermudez, Felipe G. Article ISI MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2023)
Levels of persistent organic pollutants (POPs) in the Antarctic atmosphere over time (1980 to 2021) and estimation of their atmospheric half-lives Gomez-Aburto, Victoria A.; Huneeus, Nicolas; Chiang, Gustavo; Pozo, Karla Article ISI Atmospheric chemistry and physics (2023)
Metagenomic profiling pipelines improve taxonomic classification for 16S amplicon sequencing data Odom, Aubrey R.; Faits, Tyler Article ISI Scientific Reports (2023)
Nasal Bacteriomes of Patients with Asthma and Allergic Rhinitis Show Unique Composition, Structure, Function and Interactions Boechat, Jose Laerte; Rama, Tiago Azenha Article ISI MICROORGANISMS (2023)
Seasonal and Spatially Distributed Viral Metagenomes from Comau Fjord (42°S), Patagonia Article ISI MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2023)
Spatially and Temporally Explicit Metagenomes and Metagenome-Assembled Genomes from the Comau Fjord (42°S), Patagonia Article ISI MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2023)
The oral bacteriomes of patients with allergic rhinitis and asthma differ from that of healthy controls Laerte Boechat, Jose; Azenha Rama, Tiago Article ISI FRONTIERS IN MICROBIOLOGY (2023)
Annotating unknown species of urban microorganisms on a global scale unveils novel functional diversity and local environment association Jun Wu, David Danko, Ebrahim Afshinnekoo, Daniela Bezdan, Malay Bhattacharyya, Eduardo Castro-Nallar, Agnieszka Chmielarczyk, Nur Hazlin Hazrin-Chong, Youping Deng, Emmanuel Dias-Neto, Alina Frolova, Gabriella Mason-Buck, Gregorio Iraola, Soojin Jang, Paw Article ISI ENVIRONMENTAL RESEARCH (2022)
Comparative Analysis of Metagenomics and Metataxonomics for the Characterization of Vermicompost Microbiomes Narayanan, Dhatri Badri; Dominguez, Jorge Article ISI FRONTIERS IN MICROBIOLOGY (2022)
Influence of Physical-Chemical Soil Parameters on Microbiota Composition and Diversity in a Deep Hyperarid Core of the Atacama Desert Choque, Alessandra; Alarcon, Jaime; Arenas, Franko; Saavedra, Claudia P.; Prietzel, Joerg; Klysubun, Wantana; Remonsellez Francisco; Bol, Roland Article ISI Frontiers in Microbiology (2022)
Long-Term Interactions of Salmonella Enteritidis With a Lytic Phage for 21 Days in High Nutrients Media Benavides, Julio; Arredondo, Fernanda; Bastias, Roberto; Ruiz, Soledad Article ISI FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2022)
Predicting climate change-related genetic offset for the endangered southern South American conifer Araucaria araucana Varas-Myrik, Antonio; Sepulveda-Espinoza, Francisco Article ISI FOREST ECOLOGY AND MANAGEMENT (2022)
Source and acquisition of rhizosphere microbes in Antarctic vascular plants Alarcon, Jaime Article ISI Frontiers in Microbiology (2022)
The Genome of the Marine Alga Ulva compressa (Chlorophyta) Reveals Protein-Coding Genes with Similarity to Plants and Green Microalgae, but Also to Animal, Bacterial, and Fungal Genes Tapia-Reyes, Patricio; Laporte, Daniel; Moenne, Alejandra Article ISI INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2022)
Transcriptomic analyses reveal increased expression of dioxygenases, monooxygenases, and other metabolizing enzymes involved in anthracene degradation in the marine alga Ulva lactuca Romero, Stephanie; Mendez, Patricia; Sepulveda, Muriel; Laporte, Daniel; Moenne, Alejandra Article ISI FRONTIERS IN PLANT SCIENCE (2022)
A global metagenomic map of urban microbiomes and antimicrobial resistance Afshin, Evan E.; Jackson, Katelyn; Kuchin, Katerina; Mak, Lauren; Ryon, Krista A.; Abudayyeh, Omar O.; Gankin, Dennis; Gootenberg, Jonathan S.; Hastings, Jaden J. A.; Ljungdahl, Per O.; et al. Article ISI CELL (2021)
Composition and structure of the skin microbiota of rorquals off the Eastern South Pacific Alarcon, Jaime; Capella, Juan; Bahamonde, Paulina Article ISI FEMS MICROBIOLOGY ECOLOGY (2021)
COVID-19 drug practices risk antimicrobial resistance evolution Burguete-Garcia, Ana; Prithiviraj, Bharath; Werner, Johannes; Mercedes Zambrano, Maria; MetaSUB Consortium Article ISI LANCET MICROBE (2021)
Genetic Characterization of Salmonella Infantis with Multiple Drug Resistance Profiles Isolated from a Poultry-Farm in Chile Lorca, Diego; Krueger, Gabriel; Zepeda, Phillippi; Sulbaran-Bracho, Yoelvis; Hidalgo, Alejandro; Remonsellez Francisco; Saavedra Claudia Article ISI MICROORGANISMS (2021)
Living to the High Extreme: Unraveling the Composition, Structure, and Functional Insights of Bacterial Communities Thriving in the Arsenic-Rich Salar de Huasco Altiplanic Ecosystem Fortt, Jonathan; Remonsellez Francisco; Saavedra, Claudia P. Article ISI MICROBIOLOGY SPECTRUM (2021)
Patterns of the fecal microbiota in the Juan Fernández fur seal (Arctocephalus philippii) Stubbs, Samuel; Blacklaws, Barbara Article ISI MICROBIOLOGYOPEN (2021)
Phosphate-Arsenic Interactions in Halophilic Microorganisms of the Microbial Mat from Laguna Tebenquiche: from the Microenvironment to the Genomes Saona, L. A.; Milucka, J. Article ISI MICROBIAL ECOLOGY (2021)
Radiation-induced toxicity in rectal epithelial stem cell contributes to acute radiation injury in rectum Tirado, Felipe Rodriguez; Bhanja, Payel; Olea, Ximena Diaz; Saha, Subhrajit Article ISI STEM CELL RESEARCH & THERAPY (2021)
Rhodococcus comparative genomics reveals a phylogenomic-dependent non-ribosomal peptide synthetase distribution: insights into biosynthetic gene cluster connection to an orphan metabolite Article ISI MICROBIAL GENOMICS (2021)
Biotransformation of 2,4,6-Trinitrotoluene by Pseudomonas sp. TNT3 isolated from Deception Island, Antarctica Cabrera, Ma. Ángeles; Osorio, Manuel, I Article ISI SCOPUS Environmental Pollution (2020)
Cartography of opportunistic pathogens and antibiotic resistance genes in a tertiary hospital environment Chng, Kern Rei; Li, Chenhao; Bertrand, Denis; Ng, Amanda Hui Qi; Kwah, Junmei Samantha; Low, Hwee Meng; Tong, Chengxuan; Natrajan, Maanasa; Zhang, Michael Hongjie; Xu, Licheng; et al. Article ISI NATURE MEDICINE (2020)
Copper-induced concomitant increases in photosynthesis, respiration, and C, N and S assimilation revealed by transcriptomic analyses in Ulva compressa (Chlorophyta) SaÃ©z C.A. Article ISI SCOPUS BMC PLANT BIOLOGY (2020)
Evaluation of computational methods for human microbiome analysis using simulated data Article ISI PEERJ (2020)
Genomic variation and arsenic tolerance emerged as niche specific adaptations by different Exiguobacterium strains isolated from the extreme Salar de Huasco environment in Chilean – Altiplano Article ISI Frontiers in Microbiology (2020)
Genomic Variation and Arsenic Tolerance Emerged as Niche Specific Adaptations by DifferentExiguobacteriumStrains Isolated From the Extreme Salar de Huasco Environment in Chilean - Altiplano Remonsellez Francisco; Saavedra, Claudia P. Article ISI FRONTIERS IN MICROBIOLOGY (2020)
Monitoring the occurrence of microplastic ingestion in Otariids along the Peruvian and Chilean coasts Toro-Valdivieso, Constanza; Ayala, Félix; Brito, Beatriz; Iturra, Lunna; Arriagada, Maite; Seguel, Mauricio; Barrios, Carmen ; Jorquera, Alberto Article ISI SCOPUS (2020)
Origin, genomic diversity and microevolution of the Clostridium difficile B1/NAP1/RT027/ST01 strain in Costa Rica, Chile, Honduras and Mexico Guzman, Ana M. Article ISI MICROBIAL GENOMICS (2020)
Rapid sequence modification in the highly polymorphic region (HPR) of the hemagglutinin gene of the infectious salmon anaemia virus (ISAV) suggests intra-segmental template switching recombination Toledo, Jorge Article ISI JOURNAL OF FISH DISEASES (2020)
Sequences of Endophytic Fungal and Bacterial Communities from Araucaria araucana [(Molina) K. Koch, 1869] in the Coastal and Andes Mountain Ranges, Chile Zamora, Pablo; Boehmwald, Freddy Article SCOPUS MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2020)
Sequences of Endophytic Fungal and Bacterial Communities from Araucaria araucana [(Molina) K. Koch, 1869] in the Coastal and Andes Mountain Ranges, Chile Alarcon, Jaime; Zamora, Pablo; Boehmwald, Freddy Article ISI MICROBIOLOGY RESOURCE ANNOUNCEMENTS (2020)
A first insight into the structure and function of rhizosphere microbiota in Antarctic plants using shotgun metagenomic Article ISI SCOPUS POLAR BIOLOGY (2019)
Altered Middle Ear Microbiome in Children With Chronic Otitis Media With Effusion and Respiratory Illnesses Kolbe A.R. Article ISI SCOPUS FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2019)
Analysis of co-regulated abundance of genes associated with arsenic and phosphate metabolism in Andean Microbial Ecosystems Article BioRxiv (2019)
Arsenic Response of Three Altiplanic Exiguobacterium Strains With Different Tolerance Levels Against the Metalloid Species: A Proteomics Study Sulbaran, Yoelvis; Cabezas, Carolina; Gariazzo, Valentina; Briones, Alan; Seveno, Martial; Decourcelle, Mathilde; Salvetat, Nicolas; Remonsellez Francisco; Molina, Franck; Molina, Laurence; et al. Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2019)
Genomic and Physiological Traits o the Marine Bacterium Alcaligenes aquatilis QD168 Isolated From Quintero Bay, Central Chile, Reveal a Robust Adaptive Response to Environmental Stressors Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2019)
Global Genetic Cartography of Urban Metagenomes and Anti-Microbial Resistance David C Danko, Daniela Bezdan, Ebrahim Afshinnekoo, Sofia Ahsanuddin, Josue Alicea, Chandrima Bhattacharya, Malay Bhattacharyya, Ran Blekhman, Daniel J Butler, Eduardo Castro-Nallar, Ana M Canas, Aspassia D Chatziefthimiou, Kern Rei Chng, David A Coil, Ro Article BioRxiv (2019)
In-Depth Genomic and Phenotypic Characterization of the Antarctic Psychrotolerant Strain Pseudomonas sp. MPC6 Reveals Unique Metabolic Features, Plasticity, and Biotechnological Potential Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2019)
The Transcription Factor ArcA Modulates Salmonella's Metabolism in Response to Neutrophil Hypochlorous Acid-Mediated Stress Hidalgo, Alejandro A.; Saavedra, Claudia P. Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2019)
Variability in Genomic and Virulent Properties of Porphyromonas gingivalis Strains Isolated From Healthy and Severe Chronic Periodontitis Individuals Hoare, Anilei; Soto, Cristopher; Bugueno, Isaac; Olivera, Marcela; Manuel Perez-Donoso, Jose; Bravo, Denisse Article ISI SCOPUS FRONTIERS IN CELLULAR AND INFECTION MICROBIOLOGY (2019)
Comparative genomic analysis of a new tellurite-resistant Psychrobacter strain isolated from the Antarctic Peninsula Christian Vasquez, Claudio; Hugo Morales, Eduardo; Melissa Munoz-Villagran, Claudia; Arenas-Salinas, Mauricio; Cornejo, Fabian; Alejandro Arenas, Felipe; Undabarrena, Agustina; Castro-Nallar, Eduardo; Mendez, Katterinne N. Article ISI SCOPUS PEERJ (2018)
Complete genome sequence of the marine Rhodococcus sp H-CA8f isolated from Comau fjord in Northern Patagonia, Chile Salvà-Serra, F.; Jaén-Luchoro, D.; Mendez, K.N. Article ISI SCOPUS MARINE GENOMICS (2018)
Copper-induced increased expression of genes involved in photosynthesis, carotenoid synthesis and C assimilation in the marine alga Ulva compressa Laporte, Daniel; Meneses, Claudio; Pablo Huidobro-Toro, Juan; Moenne, Alejandra Article ISI SCOPUS BMC GENOMICS (2018)
Cyclic AMP Regulates Bacterial Persistence through Repression of the Oxidative Stress Response and SOS-Dependent DNA Repair in Uropathogenic Escherichia coli Camilli, Andrew; Castro-Nallar, Eduardo; Levy, Stuart B.; Brewster, Jennifer; Silva-Valenzuela, Cecilia Article ISI SCOPUS mBio (2018)
Genome sequence of two members of the chloroaromatic-degrading MT community: Pseudomonas reinekei MT1 and Achromobacter xylosoxidans MT3 Izabook Gutierrez-Urrutia, Matthieu J. Miossec, Sandro L. Valenzuela, Claudio Meneses, Vitor A.P. Martins dos Santos, Eduardo Castro-Nallar, Ignacio Poblete-Castro Article JOURNAL OF BIOTECHNOLOGY (2018)
Genomic Analysis of 48 Paenibacillus larvae Bacteriophages Stamereilers, C; Fajardo, CP; Walker, JK; Grose, JH; Hope, S; Tsourkas, PK Article ISI SCOPUS VIRUSES-BASEL (2018)
Metagenomic exploration of soils microbial communities associated to Antarctic vascular plants Marco A Molina-Montenegro, Gabriel I Ballesteros, Eduardo Castro-Nallar, Claudio Meneses, Cristian Torres-Díaz, Jorge Gallardo-Cerda Article PeerJ PrePrints (2018)
The Tracheal Microbiota in Patients with a Tracheostomy Before, During, and After an Acute Respiratory Infection Graham, Robert J.; Coquillette, Madeline; Jafarey, Amenah; Castro-Nallar, Eduardo; Aira, Manuel; Hoptay, Claire; Freishtat, Robert J.; Mansbach, Jonathan M. Article ISI SCOPUS The Pediatric infectious disease journal (2018)
The transcription factor SlyA from Salmonella Typhimurium regulates genes in response to hydrogen peroxide and sodium hypochlorite Cabezas, Carolina E.; BRIONES, ALAN C.; Aguirre, Camila; Pardo-Este, Coral; Castro-Severyn, Juan; Salinas, Cesar R.; Baquedano, Maria S.; Hidalgo, Alejandro A.; Fuentes, Juan A.; Morales, Eduardo H; et al. Article ISI SCOPUS RESEARCH IN MICROBIOLOGY (2018)
Comparative Genomics Analysis of a New Exiguobacterium Strain from Salar de Huasco Reveals a Repertoire of Stress-Related Genes and Arsenic Resistance Juan Castro-Severyn, Francisco Remonsellez, Sandro L Valenzuela, Cesar Salinas, Jonathan Fortt, Pablo Aguilar, Coral Pardo-Esté, Cristina Dorador, Raquel Quatrini, Franck Molina, Daniel Aguayo, Eduardo Castro-Nallar, Claudia P Saavedra Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2017)
Computational Methods for Human Microbiome Analysis Miossec, Matthieu J.; Valenzuela, Sandro L.; Mendez, Katterinne N.; Castro-Nallar, Eduardo Article Current Protocols in Microbiology (2017)
DNA Barcoding analysis of seafood accuracy in Washington, DC restaurants Stern D.B.; Rathod J. Article ISI SCOPUS PEERJ (2017)
Draft Genome Sequences of Five Enterococcus Species Isolated from the Gut of Patients with Suspected Clostridium difficile Infection Castro-Nallar, Eduardo; Valenzuela, Sandro L.; Baquedano, Sebastián Article WOS-ESCI SCOPUS Genome Announcements (2017)
Genome sequence of streptomyces sp. H-KF8, a marine actinobacterium isolated from a northern chilean patagonian fjord Article WOS-ESCI SCOPUS Genome Announcements (2017)
Microbial sequence typing in the genomic era Pérez-Losada, Marcos; Arenas, Miguel; Castro-Nallar, Eduardo Article SCOPUS INFECTION GENETICS AND EVOLUTION (2017)
Mutation and recombination in pathogen evolution: Relevance, methods and controversies Arenas, Miguel; Araujo, Natalia M.; Branco, Catarina; Castelhano, Nadine; Castro-Nallar, Eduardo; Pérez-Losada, Marcos Article SCOPUS INFECTION GENETICS AND EVOLUTION (2017)
The temporal dynamics of the tracheal microbiome in tracheostomised patients with and without lower respiratory infections Pérez-Losada, Marcos; Graham, Robert J.; Coquillette, Madeline; Jafarey, Amenah; Castro-Nallar, Eduardo; Aira, Manuel; Freishtat, Robert J.; Mansbach, Jonathan M.; Wilson, Brenda A Article ISI SCOPUS PLOS ONE (2017)
Draft Genome Sequence of a Multi-Metal Resistant Bacterium Pseudomonas putida ATH-43 Isolated from Greenwich Island, Antarctica Fernanda Rodríguez-Rojas, Paz Tapia, Eduardo Castro-Nallar, Agustina Undabarrena, Pablo Muñoz-Díaz, Mauricio Arenas-Salinas, Waldo Díaz-Vásquez, Jorge Valdés, Claudio Vásquez Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2016)
Genome Sequence of Clostridium paraputrificum 373-A1 Isolated in Chile from a Patient Infected with Clostridium difficile Guerrero-Araya, Enzo; Díaz-Yañez, Fernando; Pizaro-Guajardo, Marjorie; Valenzuela, Sandro L.; Castro-Nallar, Eduardo Article WOS-ESCI SCOPUS Genome Announcements (2016)
Metataxonomic and Metagenomic Approaches vs. Culture-Based Techniques for Clinical Pathology Hilton S.K.; Toma I.; McCaffrey T.A.; Siegel M.O.; Simon G.L. Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2016)
Redefining Healthy Urine: A Cross-Sectional Exploratory Metagenomic Study of People With and Without Bladder Dysfunction Groah, SL; Caldovic, L; Ljungberg, IH; Sprague, BM; Chandel, NJ; Pohl, HG Article ISI SCOPUS JOURNAL OF UROLOGY (2016)
Composition, taxonomy and functional diversity of the oropharynx microbiome in individuals with schizophrenia and controls Castro-Nallar, E; Bendall, ML; Perez-Losada, M.; Sabuncyan, S; Severance, EG; Dickerson, FB; Schroeder, JR; Yolken, RH; Crandall, KA Article ISI SCOPUS PEERJ (2015)
Concordance and discordance of sequence survey methods for molecular epidemiology Hasan, Nur A.; Cebula, Thomas A.; Colwell, Rita R.; Robison, Richard A.; Johnson, W. Evan Article ISI PEERJ (2015)
Dual Transcriptomic Profiling of Host and Microbiota during Health and Disease in Pediatric Asthma Perez-Losada, M.; Castro-Nallar, E; Bendall, ML; Freishtat, RJ; Crandall, KA Article ISI SCOPUS PLOS ONE (2015)
Integrating microbial and host transcriptomics to characterize asthma-associated microbial communities Castro-Nallar, E; Shen, Y.; Freishtat, RJ; Perez-Losada, M.; Manimaran, S; Liu, G; Johnson, WE; Crandall, KA Article ISI SCOPUS BMC Medical Genomics (2015)
Clinical PathoScope: rapid alignment and filtration for accurate pathogen identification in clinical samples using unassembled sequencing data Byrd, Allyson L.; Perez-Rogers, Joseph F.; Manimaran, Solaiappan; Toma, Ian; McCaffrey, Tim; Siegel, Marc; Benson, Gary; Johnson, William Evan Article ISI BMC BIOINFORMATICS (2014)
PathoScope 2.0: a complete computational framework for strain identification in environmental or clinical sequencing samples Shen, Ying Article ISI MICROBIOME (2014)
Single-Molecule Long-Read 16S Sequencing To Characterize the Lung Microbiome from Mechanically Ventilated Patients with Suspected Pneumonia Siegel, Marc O.; Keiser, John; Yakovleva, Anna; Kim, Alvin; Davenport, Lionel; Devaney, Joseph; Hoffman, Eric P.; Alsubail, Rami; Hilton, Sarah K.; Chawla, Lakhmir S.; et al. Article ISI JOURNAL OF CLINICAL MICROBIOLOGY (2014)
Whole genome single-nucleotide variation profile-based phylogenetic tree building methods for analysis of viral, bacterial and human genomes Faison, William J.; Rostovtsev, Alexandre; Chumakov, Konstantin; Simonyan, Vahan; Mazumder, Raja Article ISI GENOMICS (2014)
Pathogen typing in the genomics era: MLST and the future of molecular epidemiology Cabezas, Patricia Article ISI INFECTION GENETICS AND EVOLUTION (2013)
Pathoscope: Species identification and strain attribution with unassembled sequencing data Francis, Owen E.; Bendall, Matthew; Hong, Changjin; Clement, Nathan L.; Snell, Quinn; Schaalje, G. Bruce; Clement, Mark J. Article ISI GENOME RESEARCH (2013)
Phage cluster relationships identified through single gene analysis Kyle C Smith, Eduardo Castro-Nallar, Joshua NB Fisher, Donald P Breakwell, Julianne H Grose, Sandra H Burnett Article BMC GENOMICS (2013)
tat Exon 1 Exhibits Functional Diversity during HIV-1 Subtype C Primary Infection Rossenkhan, Raabya; MacLeod, Iain J.; Sebunya, Theresa K.; McLane, Mary Fran; Musonda, Rosemary; Gashe, Berhanu A.; Novitsky, Vlad; Essex, M. Article ISI JOURNAL OF VIROLOGY (2013)
Genetic diversity and molecular epidemiology of HIV transmission Eduardo Castro-Nallar, Keith A Crandall, Marcos Pérez-Losada Article FUTURE VIROLOGY (2012)
Population Genomics and Phylogeography of an Australian Dairy Factory Derived Lytic Bacteriophage Chen, Honglei; Gladman, Simon; Moore, Sean C.; Seemann, Torsten; Powell, Ian B.; Hillier, Alan; Chandry, P. Scott Article ISI Genome Biology and Evolution (2012)
The evolution of HIV: inferences using phylogenetics Eduardo Castro-Nallar, Marcos Pérez-Losada, Gregory F Burton, Keith A Crandall Article MOLECULAR PHYLOGENETICS AND EVOLUTION (2012)
Molecular Phylodynamics and Protein Modeling of Infectious Salmon Anemia Virus (ISAV) Castro-Nallar, E; Martin, MCS; Mascayano, C; Molina C.; Crandall, KA Article ISI SCOPUS BMC Evolutionary Biology (2011)
Androgen Receptor Gene CAG and GGN Repeat Polymorphisms in Chilean Men With Primary Severe Spermatogenic Failure Castro-Nallar, E; Bacallao, K; parada Bustamante A; Lopez, PV; Madariaga M.; Valdevenito, R; Piottante A.; Ebensperger M.; Castro A. Article ISI SCOPUS Journal of Andrology (2010)
Nasopharyngeal metatranscriptome profiles of infants with bronchiolitis and risk of childhood asthma: a multicentre prospective study Yoshihiko Raita; Marcos Pérez-Losada Article


Microbial Sequence Typing Strategies for Genetic and Genomic Data Marcos Pérez-Losada, Eduardo Castro-Nallar, Miguel Arenas BookSection (2024)
Multilocus Sequence Typing of Pathogens: Methods, Analyses, and Applications M Pérez-Losada, M Arenas, E Castro-Nallar; Michel Tybanrenc BookSection (2017)


In infants with severe bronchiolitis: dual-transcriptomic profiling of nasopharyngeal microbiome and host response Fujiogi M.; Bernot J.P.; Harmon B.; Mansbach J.M.; Hasegawa, K. Letter ISI SCOPUS Pediatric Research (2020)


Functional Potential of Rhizosphere and Soil Microbial Communities in an Extreme Environment Instituto Antártico Chileno (RG_21-18) Proyecto 2019-2020 Inv. Responsable
Salmonella-bacteriophage coevolution and their genetic modifications during lifestyle cycles of Salmonella on non-host (water and soil) and host environments (chickens) FONDECYT (1181167) Proyecto 2017-2020 Coinvestigador(a)
Evaluation of Computational Methods for Human Microbiome Analysis=> A Case Study on Oral Microbiome and Childhood Asthma PAI (82140008) Proyecto 2016-2017 Inv. Principal
Proyecto VitaTerra UC Davis Chile (000) Proyecto 2016-2018 Inv. Principal
REVEALING SPATIAL AND SEASONAL PATTERNS OF MICROBIAL GENETIC DIVERSITY THROUGH METAGENOMICS IN A HUMAN IMPACTED ECOSYSTEM FONDECYT (11160905) Proyecto 2016-2019 Inv. Responsable
SBIR Phase II=> Rapid Pathogen Diagnostics and Biosurveillance using Multiplexed High-throughput Sequencing National Science Foundation (1534469) Proyecto 2015-2017 Inv. Principal
HIV-1 evolution and compartmentalization=> spatial and temporal intra-host dynamics Children's National Medical Center (DC DCFAR) (000) Proyecto 2014-2014 Investigador(a)
Phase Ib Supplement to=> Rapid Pathogen Diagnostics and Biosurveillance using Multiplexed High- throughput Sequencing National Science Foundation (1415670) Proyecto 2014-2015 Inv. Principal
SBIR Phase I=> Rapid Pathogen Diagnostics and Biosurveillance using Multiplexed High- throughput Sequencing National Science Foundation (1415670) Proyecto 2014-2015 Inv. Principal
Virginia i6 VIP NextGen Diagnostics University of Virginia, Department of Commerce Proyecto 2014-2014 Investigador(a)
NSF I-Corps=> NextGen Diagnostics National Science Foundation (1334101) Proyecto 2013-2014 Investigador(a)
Technological internships=> Identification and Detection tools for Fish Alphaviruses CORFO (09PTEC-5241) Proyecto 2009-2009 Investigador(a)
EVENTOS INICIALES DE LA MORFOGENESIS DE ROTAVIRUS FONDECYT (1050002) Proyecto 2005-2009 Tesista


Role of Microbes in the degradation of organic semivolatile compounds in polar ecosystems: A review Review ISI SCIENCE OF THE TOTAL ENVIRONMENT (2023)

Rodrigo Hasbun

Profesor asociado

Silvicultura

Universidad de Concepción

Concepcion, Chile

Jorge González

Jefe de Departamento

Departamento Científico

INSTITUTO ANTÁRTICO CHILENO

Punta Arenas, Chile

Michael Seeger

Full Professor

Chemistry

UNIVERSIDAD TÉCNICA FEDERICO SANTA MARÍA

Valparaíso, Chile

DORIS OLIVA

Directora Instituto

Instituto de Biología

UNIVERSIDAD DE VALPARAÍSO

Valparaíso, Chile

Carolina Mascayano

Académico

Ciencias del Ambiente

UNIVERSIDAD DE SANTIAGO DE CHILE, FACULTAD DE QUÍMICA Y BIOLOGIA

santiago, Chile

Alejandra Moenne

Profesor Titular

Biologia

UNIVERSIDAD DE SANTIAGO DE CHILE

Santiago, Chile

Claudia Saavedra

Full Professor

Departmento de Ciencias de la Vida

UNIVERSIDAD ANDRÉS BELLO

Santiago, Chile

Denisse Bravo

Profesora Titular

Odontología

Universidad Andrés Bello

Santiago, Chile

Maritza Sepulveda

Academic

UNIVERSIDAD DE VALPARAÍSO

Valparaíso, Chile

FRANCISCO REMONSELLEZ

Professor

Ingenieria Química

UNIVERSIDAD CATÓLICA DEL NORTE

Antofagasta, Chile

Alexis Parada

PROFESOR ASOCIADO

REPRODUCCION

INSTITUTO DE INVESTIGACIONES MATERNO INFANTIL, FACULTAD DE MEDICINA, UNIVERSIDAD DE CHILE

Santiago, Chile

Juan García-Huidobro

Profesor Titular

Biologia

Universidad de Santiago de Chile

Santiago de Chile, Chile

Felipe Arenas

Profesor Asociado

Biología

UNIVERSIDAD SANTIAGO DE CHILE

Santiago, Chile

Anilei Hoare

Profesora Asistente

Medicina y Patología Oral

Universidad de Chile

SANTIAGO, Chile

Andrés Marcoleta

Profesor Asistente

Biología

FACULTAD DE CIENCIAS, UNIVERSIDAD DE CHILE

Santiago, Chile

Marlen Gutierrez

Investigador

Centro para el Desarrollo de la Nanociencia y Nanotecnologia

Universidad de Santiago de Chile

Santiago, Chile

Fernando Gonzalez

Titular Professor

Facultad de Ciencias de la Vida

Universidad Andres Bello

Santiago, Chile

Roberto Molina

Investigador Científico

Biología

Centro de Estudios Científicos

Valdivia, Chile

Beatriz Cámara

Associate Investigator

Departamento de Química/Centro de Biotecnología Daniel Alkalay

UNIVERSIDAD TÉCNICA FEDERICO SANTA MARÍA

Valparaíso, Chile

Jorge Valdes

PROFESOR ASOCIADO

CENTRO DE BIOINFORMÁTICA Y BIOLOGÍA INTEGRATIVA

Universidad Andrés Bello

Santiago, Chile

Claudio Meneses

Profesor Asociado

Facultad de Agronomía y Sistemas Naturales

Pontificia Universidad Católica de Chile

Santiago, Chile

Manuel Osorio

Docente

Medicina

UNIVERSIDAD DIEGO PORTALES

Santiago, Chile

Raul Valdevenito

Chair

UNIVERSIDAD DE CHILE, HOSPITAL CLINICO UNIVERSIDAD DE CHILE

Santiago, Chile

Daniel Aguayo

Associate Professor

ITISB

UNIVERSIDAD ANDRES BELLO

Viña del Mar, Chile

Daniel Laporte

Académico Investigador

Instituto de Ciencias Biomédicas

Universidad Autónoma de Chile

Talca, Chile

Jorge Toledo

Director de Departamento

Fisiopatología

Universidad de Concepción

Concepcion, Chile

Claudio Giesecke

Profesor adjunto

Cieincias

Universidad Austral de Chile

Valdivia, Chile

Daniel Paredes

Associate Professor

Department of Biological Sciences

Universidad Andrés Bello

Santiago, Chile

Victor Neira

Associate Professor

Medicina Preventiva

Universidad de Chile, Facultad de Ciencias Veterinarias

Santiago, Chile

Carolina Sanchez

Assistant Professor, Faculty of Science; Principal Investigator of Advanced Genomics Laboratory; Head of DNA Sequencing Core of the Center for Genomics and Bioinformatics

Center for Genomics and Bioinformatics

Universidad Mayor

Santiago, Chile

Jorge Olivares

Profesor Asociado

Biology

Pontificia Universidad Católica de Valparaíso

Valparaíso, Chile

Ignacio Poblete

Professor

Chemical and Bioprocess Engineering

Universidad de Santiago de Chile

santiago, Chile

Mauricio Urbina

Professor asistente

Zoología

Universidad de Concepcion

Concepcion, Chile

Mauricio Arenas

Profesor Asistente

Bioinformática

UNIVERSIDAD DE TALCA

talca, Chile

Cristóbal Galbán

Profesor Titular

Centro de Genómica, Ecología y Medio Ambiente

Universidad Mayor de Chile

Santiago de Chile, Chile

Paulina Bahamonde

Profesora Asistente

Centro Resiliencia, Adaptación y Mitigación

Universidad Mayor de Chile

TEMUCO, Chile

Oscar Toro

Profesor Asistente

Departamento de Botanica

Universidad de Concepción

Concepcion, Chile

Juan Höfer

Profesor Adjunto

Pontificia Universidad Católica de Valparaíso

Valparaiso, Chile

Aiko Adell

Profesor Asociado

Universidad Andrés Bello

Santiago, Chile

Ian Acuña

Investigador Asistente

Instituto de Investigación Interdisciplinaria (I3)

Universidad de Talca

Talca, Chile

Claudio Sáez

Director General

centro HUB AMBIENTAL UPLA

UNIVERSIDAD DE PLAYA ANCHA DE CIENCIAS DE LA EDUCACION

Valparaíso, Chile

Eduardo Castro

Associate Professor

Departamento de Microbiología

Universidad de Talca

Talca, Chile

Carolina Quezada

Postdoctoral researcher

CIBQA

Universidad Bernardo O'Higgins

Santiago, Chile

Fernanda Rodríguez

Profesora Titular

Facultad de Ciencias Naturales y Exactas

Universidad de Playa Ancha de Ciencias de la Educación

Valparaíso, Chile

Raquel Quatrini

Research Associate

Fundación Ciencia & Vida

Santiago, Chile

Alejandro Hidalgo

Associate Professor

Escuela de Química y Farmacia

Universidad Andres Bello

Santiago, Chile

Alberto González

Académico

Biología

Universidad de Santiago de Chile

Estación Central, Chile

Juan Fuentes

Académico

Ciencias Biológicas

Universidad Andrés Bello

Santiago, Chile

Héctor Osorio

Postdoctorado

Departamento de Biología

Universidad de Santiago de Chile

Santiago, Chile

Roberto Bastías

Profesor

Facultad de Ciencias

Pontificia Universidad Católica de Valparaíso

Valparaíso, Chile

Gonzalo Barriga

Profesor Asistente

Instituto de Ciencias Biomedicas

Universidad de Chile

Santiago, Chile

Gustavo Chiang

Profesor Asociado

Departamento de Ecología y Biodiversidad

Universidad Andrés Bello

Santiago, Chile

Andrea Moreno

Profesor Asociado

Pontificia Universidad Católica de Chile

SANTIAGO, Chile

Mario Tello

Académico

Biología

Universidad de Santiago de Chile

Santiago, Chile

Yesseny Vasquez

Academico

Facultad de Ciencias Médicas

Universidad de Santiago de Chile

Santiago, Chile

Claudia Muñoz

Investigador

Biología

Universidad de Santiago de Chile

Santiago, Chile

Laura Rodriguez

Tesista de Doctorado

Química

Universidad Técnica Federico Santa María

Valparaiso, Chile

Juan Ugalde

Assistant Professor

Facultad de Ciencias de la Vida

Universidad Andrés Bello

Santiago, Chile

Sofía Michelson

Dra (c) Biotecnología

Biología

Universidad de Santiago de Chile

Santiago, Chile

Carolina Cabezas

Pablo Muñoz

Docente

Ciencias básicas

Universidad San Sebastián

Santiago, Chile

Coral Pardo

Investigador postdoctoral

Universidad Católica del Norte

antofagasta, Chile

Gabriel Krüger

Investigador Doctoral

Universidad Andrés Bello

Santiago Centro, Chile

Roberto Durán

Investigador (Programa Asistentes Científicos)

Departamento de Química

Universidad Técnica Federico Santa María

Valparaíso, Chile

Angela Plaza

Postodoctorado

Ingeniería Civile en Obras Civil

Universidad de Santiago de Chile

Estación Central, Chile

Enzo Guerrero

PhD Student

Universidad Andrés Bello

Santiago, Chile

DIANA ALVAREZ

Profesora Asistente

Pontificia Universidad Católica de Chile

Santiago de Chile, Chile

Soledad Ruiz

Académica Investigadora

Facultad de Recursos Natrurales y Medicina Veterinaria

Universidad Santo Tomas

Santiago, Chile

Paz Tapia

Ingeniera en Bioinformatica

Laboratorio Biomedico

Instituto de Salud Publica

Santiago, Chile

Diego Pérez

Profesor jornada

Ecología y recursos naturales

Universidad Andrés Bello

Santiago, Chile

LEA CABROL

Investigadora adjunta

Instituto Milenio BASE (Biodiversidad de Ecosistemas Antarcticos y Subantarcticos)

Santiago, Chile

Juan Castro

Post-Doctorante

Universidad Católica del Norte

Antofagasta, Chile

Nicolas Pacheco

PROFESOR ADJUNTO

CIENCIAS BIOLOGICAS

Universidad Andrés Bello

Santiago centro, Chile

SEBASTIÁN MÁRQUEZ

Investigador

Fundación Biociencia

Santiago, Chile

Pablo Aguilar

Academico

Departamento de Biotecnologia

Universidad de Antofagasta

Antofagasta, Chile

Lucas Krüger

Researcher

Instituto Antártico Chileno

Punta Arenas, Chile

Alan Briones

Bioquímico Clínico

Hospital San Juan de Dios

Santiago, Chile

Sandro Valenzuela

Bioinformático

Bioinformática

Multiplex SpA

Santiago, Chile

Eduardo Felipe Castro Nallar

Líneas de Investigación

Educación

Science and Humanities, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2001

Biochemistry, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2006

PhD in Biological Sciences, GEORGE WASHINGTON UNIVERSITY. Estados Unidos, 2015

Biochemistry, UNIVERSIDAD DE SANTIAGO DE CHILE. Chile, 2007

Experiencia Académica

Associate Professor Full Time

Adjunct Researcher Part Time

Associate Professor Full Time

Experiencia Profesional

Teaching Assistant

Jefe de Laboratorio

Asistente de investigación

Teaching Assistant

Tesista pregrado

Chief Science Officer

Consultor

Profesor Investigador Full Time

Premios y Distinciones

Technological internships: Identification and Detection tools for Fish Alphaviruses.

Bicentennial Fellowship for International PhD studies.

Brigham Young University mentoring award.

Brigham Young University graduate fellowship award.

Entrepreneurial Lead in NSF I Corps program

Top 100 most influential young individuals in Chile.

MIT Technology Review innovators under 35 Chile.

UC Davis Chile Fellow.

Best Young Researcher 2017.

Article (94)

BookSection (2)

Letter (1)

Proyecto (13)

Functional Potential of Rhizosphere and Soil Microbial Communities in an Extreme Environment

Salmonella-bacteriophage coevolution and their genetic modifications during lifestyle cycles of Salmonella on non-host (water and soil) and host environments (chickens)

Evaluation of Computational Methods for Human Microbiome Analysis=> A Case Study on Oral Microbiome and Childhood Asthma

Proyecto VitaTerra

REVEALING SPATIAL AND SEASONAL PATTERNS OF MICROBIAL GENETIC DIVERSITY THROUGH METAGENOMICS IN A HUMAN IMPACTED ECOSYSTEM

SBIR Phase II=> Rapid Pathogen Diagnostics and Biosurveillance using Multiplexed High-throughput Sequencing

HIV-1 evolution and compartmentalization=> spatial and temporal intra-host dynamics

Phase Ib Supplement to=> Rapid Pathogen Diagnostics and Biosurveillance using Multiplexed High- throughput Sequencing

SBIR Phase I=> Rapid Pathogen Diagnostics and Biosurveillance using Multiplexed High- throughput Sequencing

Virginia i6 VIP NextGen Diagnostics

NSF I-Corps=> NextGen Diagnostics

Technological internships=> Identification and Detection tools for Fish Alphaviruses

EVENTOS INICIALES DE LA MORFOGENESIS DE ROTAVIRUS

Review (1)