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Fabien MAGNE

Profesor asociado

UNIVERSIDAD DE CHILE

Santiago, Chile

-Interplay Between the gut Microbiome and Nutrition -Role of the Microbiome in Respiratory Physiology -Impact of the Microbiome on Health During the Perinatal and Neonatal Periods

Biologia, CONSERVATOIRE NATIONAL DES ARTS ET METIERS. Francia, 2005
Ecología microbiana, patogenia de los microorganismos y agentes infecciosos, Université Paris Sud, Faculté de Pharmarcie. Francia, 2002
biología celular y fisiología, option microbiología, UNIVERSITÉ BLAISE-PASCAL. Francia, 2000

Profesor asistante Full Time

UNIVERSIDAD DE CHILE

Facultad de Medicina

Santiago, Chile

2015 - 2022
Asistant profesor Full Time

CONSERVATOIRE NATIONAL DES ARTS ET METIERS

Paris, Francia

2007 - 2015
Profesor asociado Full Time

UNIVERSIDAD DE CHILE

Facultad de Medicina

Santiago, Chile

2022 - A la fecha

Profesor associado

Conservatoire National des Arts et Métiers

Francia

2006 - 2014
Profesor assistante

Programa de microbiologia, ICBM, Facultad de Medicina, Universidad de Chile

Chile

2015 - A la fecha

Dirección de tesis de postgrado (desde 2020):

2024 - … Alejandra Zazueta. “Efecto protector de un extracto de granada sobre el eje intestino-pulmón en un modelo murino expuesto a humo de cigarro”. Doctorado en Nutrición y alimentos (Facultad de Medicina, U chile). Director de Tesis: Magne F.

2023 - … Javiera Cancino Rami?rez. “Impact of sedentary behavior in the homeostasis of the digestive ecosystem in polypectomized patients: an exploratory study”. Doctorado en Ciencias Biomédicas (Facultad de Medicina, U chile). Director de Tesis: Magne F.

2023 - 2025 Lourdes Anduni. “Efecto de la hospitalización en la adquisición de genes de resistencia a antibióticos en la microbiota intestinal”. Magister en Ciencias Biológicas (Facultad de Ciencias, U. Chile). Director de Tesis: Magne F.

2024 - 2024 Manon Sudrie. “Airway microbiome regulation of interferon response in rhinovirus-induced asthma exacerbations”. Master Infectious Diseases (Université Paris-Saclay, France). Director de Tesis: Magne F.

2021 – 2023 Oshma Chakoory. “Human pathologies prediction through the development of deep neural networks based on species-level structure of microbiota”. École doctorale des sciences de la vie, santé, agronomie, environnement (Université Clermont Auvergne, France). Thesis Director: Director: Prof. Pierre Peyret – Supervisors: Comte-Marre S and Magne F.


Acute Administration of Calafate (<i>Berberis microphylla</i>) Extract Induces the Expression of Thermogenic Markers and Modulates Gut Microbiota in Mice Fed a High-Fat Chow Diet Barroux, Robert; Magne, Fabien Article ISI LIFESTYLE GENOMICS (2024)
Alteration of Gut Microbiota Composition in the Progression of Liver Damage in Patients with Metabolic Dysfunction-Associated Steatotic Liver Disease (MASLD) Guinez, Danette; Aliaga, Nicolas; Sandoval, Alexandra; Covarrubias, Natalia; Perez de Arce, Edith; Cattaneo, Maximo; Poniachik, Jaime; Magne, Fabien; Beltran, Caroll Jenny Article ISI INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2024)
Impact of pomegranate peel extract on gut microbiota composition and metabolic health parameters in high-fat diet-fed mice Valenzuela B, Rodrigo Article ISI SCOPUS Food Bioscience (2024)
Optimization of lung tissue pre-treatment by bead homogenization for subsequent culturomics Anduni, Lourdes; Molina, Hector; Cancino, Javiera; Chakoory, Oshma; Comtet-Marre, Sophie; Peyret, Pierre; Magne, Fabien Article ISI Scientific Reports (2024)
Amerindian ancestry proportion as a risk factor for inflammatory bowel diseases: results from a Latin American Andean cohort Magne, Fabien; Aguilar, Nataly; Escobar, Sergio; Pavez-Ovalle, Carolina; Diaz-Asencio, Alejandro; Miquel, Juan Francisco Article ISI FRONTIERS IN MEDICINE (2023)
Genotype Prevalence of Lactose Deficiency, Vitamin D Deficiency, and the Vitamin D Receptor in a Chilean Inflammatory Bowel Disease Cohort: Insights from an Observational Study Segovia-Melero, Roberto; Magne, Fabien; Onetto, Gian-Franco; Escobar, Sergio; Miquel, Juan Francisco Article ISI INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES (2023)
Modulation of Postprandial Plasma Concentrations of Digestive Hormones and Gut Microbiota by Foods Containing Oat ss-Glucans in Healthy Volunteers Fresard, Andrea; Cires, Maria Jose; Vivanco, Juan Pablo; Magne, Fabien Article ISI FOODS (2023)
A Real-Time PCR Assay for Detection of Low <i>Pneumocystis jirovecii</i> Levels Bustamante, Rebeca; Magne, Fabien Article ISI FRONTIERS IN MICROBIOLOGY (2022)
Altered Nasal Microbiome in Atrophic Rhinitis: A Novel Theory of Etiopathogenesis and Therapy Sarkar, Saurav; Magne, Fabien; Venugopal, Giriprasad; Purkait, Suvendu; Mutha, Naresh V. R.; Maiti, Rituparna; Sharma, Prity; Ramadass, Balamurugan Article ISI MICROORGANISMS (2022)
Association of Gut Microbiome and Vitamin D Deficiency in Knee Osteoarthritis Patients: A Pilot Study Ramasamy, Boopalan; Magne, Fabien; Tripathy, Sujit Kumar; Mukherjee, Diptasree Article ISI NUTRIENTS (2021)
Comparison of Argentinean microbiota with other geographical populations reveals different taxonomic and functional signatures associated with obesity Pesoa, Susana A.; Portela, Nestor; Fernandez, Eduardo; Elbarcha, Osvaldo; Magne, Fabien Article ISI Scientific Reports (2021)
Performance of Saliva Samples for COVID-19 Diagnosis by Using the Allplex<SUP>TM</SUP> 2019-nCoV Assay Kit Marcia Campos; Ivone, Mora; Nadia Pozas; Lesly, Morales; Camila, Guzman; Valentina Aguilera; Paula, Ibarra; Fabien, Magne Article ISI FRONTIERS IN MEDICINE (2021)
Optimized DNA extraction and purification method for characterization of bacterial and fungal communities in lung tissue samples Magne, Fabien; Bustamante, Rebeca Article ISI Scientific Reports (2020)
The Firmicutes/Bacteroidetes Ratio: A Relevant Marker of Gut Dysbiosis in Obese Patients? Pesoa, S; Balamurugan, R Article NUTRIENTS (2020)
Microbiological characterisation of the colonisation by Candida sp in patients with orthodontic fixed appliances and evaluation of host responses in saliva Article ISI SCOPUS MYCOSES (2019)
New DNA Extraction Method for the Detection of Pneumocystis in Lung Tissue Samples of Colonized Individuals Ponce, Carolina A; Bustamante, Rebeca; Magne, Fabien Article OBM Genetics (2019)
Niflumic Acid Reverses Airway Mucus Excess and Improves Survival in the Rat Model of Steroid-Induced Pneumocystis Pneumonia Iturra P.A.; Ponce, C.A.; Garcia-Angulo V. Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2019)
Protective effect of inactivated blastoconidia in keratinocytes and human reconstituted epithelium against C. albicans infection Alburquenque C.; Rodas P.I.; Tapia C.V. Article ISI SCOPUS MEDICAL MYCOLOGY (2019)
Evaluating the Capacity of Human Gut Microorganisms to Colonize the Zebrafish Larvae (Danio rerio) Valenzuela, Maria-Jose; Caruffo, Mario; Herrera, Yoani; Coronado, Maximo; Feijoo, Carmen G.; Garrido, Daniel.; Troncoso, Miriam.; Figueroa, Guillermo.; Toro, Magaly; Reyes-Jara, Angelica; et al. Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2018)
Differential Antifungal Activity of Human and Cryptococcal Melanins with Structural Discrepancies Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2017)
Genotyping and Persistence of Candida albicans from Pregnant Women with Vulvovaginal Candidiasis Fortes, Paula; Díaz, María Cristina Article ISI SCOPUS MYCOPATHOLOGIA (2017)
The Gut Microbiota of Healthy Chilean Subjects Reveals a High Abundance of the Phylum Verrucomicrobia Fujio-Vejar S. Article ISI SCOPUS FRONTIERS IN MICROBIOLOGY (2017)
Impact of Dietary Lipids on Colonic Function and Microbiota: An Experimental Approach Involving Orlistat-Induced Fat Malabsorption in Human Volunteers Article ISI CLINICAL AND TRANSLATIONAL GASTROENTEROLOGY (2016)
The human gut microbiome of Latin America populations: a landscape to be discovered Article ISI SCOPUS CURRENT OPINION IN INFECTIOUS DISEASES (2016)
Debaryomyces hansenii and Rhodotorula mucilaginosa comprised the yeast core gut microbiota of wild and reared carnivorous salmonids, croaker and yellowtail Raggi, P; Lopez, P; Diaz A.; Carrasco, D.; Silva, A; Velez, A; Opazo, R; Magne, F Article ISI SCOPUS ENVIRONMENTAL MICROBIOLOGY (2014)
Short-term effects of dietary soybean meal and lactic acid bacteria on the intestinal morphology and microbiota of Atlantic salmon (Salmo salar) Navarrete, P; Fuentes, P; De la Fuente, L; Barros, L; Magne, F; Opazo, R; Ibacache, C; Espejo, R; Romero, J Article AQUACULTURE NUTRITION (2013)
Short-term effects of dietary soybean meal and lactic acid bacteria on the intestinal morphology and microbiota of Atlantic salmon (Salmo salar) Navarrete, P; Fuentes, P; De la Fuente, L; Barros, L; Magne, F; Opazo, R; Ibacache, C; Espejo, R; Romero, J Article AQUACULTURE NUTRITION (2013)
Effect of dietary fibre of barley variety 'Rihane' on azoxymethane-induced aberrant crypt foci development and on colonic microbiota diversity in rats Lahouar, L; Pochart, P; Ben Salem, H; El Felah, M; Mokni M.; Magne, F; Mangin, I; Suau, A; Pereira, E; Hammami, M; et al. Article ISI BRITISH JOURNAL OF NUTRITION (2012)
Long-Term Changes in Human Colonic Bifidobacterium Populations Induced by a 5-Day Oral Amoxicillin-Clavulanic Acid Treatment Mangin, I; Leveque, C; Magne, F; Suau, A; Pochart, P Article ISI PLOS ONE (2012)
PCR-TTGE Analysis of 16S rRNA from Rainbow Trout (Oncorhynchus mykiss) Gut Microbiota Reveals Host-Specific Communities of Active Bacteria Navarrete P.; Magne, F; Araneda, C; Fuentes P.; Barros, L.; Opazo, R; Espejo, R.; Romero J. Article ISI SCOPUS PLOS ONE (2012)
A fermented formula in pre-term infants: clinical tolerance, gut microbiota, down-regulation of faecal calprotectin and up-regulation of faecal secretory IgA Campeotto, F; Suau, A; Kapel, N; Magne, F; Viallon, V; Ferraris, L; Waligora-Dupriet, AJ; Soulaines, P; Leroux, B; Kalach, N; et al. Article ISI BRITISH JOURNAL OF NUTRITION (2011)
Impairment of human immunodeficiency virus type-1 integrase SUMOylation correlates with an early replication defect. Zamborlini, Alessia; Coiffic, Audrey; Beauclair, Guillaume; Delelis, Olivier; Paris, Joris; Koh, Yashuiro; Magne, Fabian; Giron, Marie-Lou; Tobaly-Tapiero, Joelle; Deprez, Eric; Emiliani, Stephane; Engelman, Alan; de Thé, Hugues; Saïb, Ali Article The Journal of biological chemistry (2011)
Faecal Bifidobacteria in Indian Neonates & the Effect of Asymptomatic Rotavirus Infection During the First Month of Life Balamurugan, R; Magne, Fabien; Balakrishnan, Divya; Suau, Antonia; Kang, Gagandeep; Ramakrishna, Balakrishnan S Article INDIAN JOURNAL OF MEDICAL RESEARCH (2010)
Metronidazole effects on microbiota and mucus layer thickness in the rat gut Pelissier, MA; Vásquez N.; Balamurugan, R; Pereira, E; Dossou-Yovo, F; Suau, A; Pochart, P; Magne, F Article ISI FEMS MICROBIOLOGY ECOLOGY (2010)
Molecular analysis of intestinal microbiota of rainbow trout (Oncorhynchus mykiss) Navarrete P.; Magne, F; Mardones P.; Riveros M.; Opazo, R; Suau, A; Pochart, P; Romero J. Article ISI SCOPUS FEMS MICROBIOLOGY ECOLOGY (2010)
Short-chain fatty acids and commensal microbiota in the faeces of severely malnourished children with cholera rehydrated with three different carbohydrates. Monira, S; Hoq, Md M; Chowdhury, A K A; Suau, A; Magne, F; Endtz, H Ph; Alam, M; Rahman, M; Pochart, P; Desjeux, J-F; Alam, N H Article European journal of clinical nutrition (2010)
Differential Effects of Bifidobacterium pseudolongum Strain Patronus and Metronidazole in the Rat Gut Vasquez, Nadia; Suau, Antonia; Magne, Fabien; Pochart, Philippe; Pelissier, Marie-Agnes Article ISI APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2009)
Time Course of Bacterial Diversity in Stool Samples of Malnourished Children With Cholera Receiving Treatment Monira, Shirajum; Alam, Nur Haque; Suau, Antonia; Magne, Fabien; Nair, Gopinath Balakrish; Karmakar, Polash Chandra; Rahman, Motiur; Pochart, Philippe; Desjeux, Jehan-Francois Article ISI JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION (2009)
Effects on faecal microbiota of dietary and acidic oligosaccharides in children during partial formula feeding Magne, Fabien; Hachelaf, Wahiba; Suau, Antonia; Boudraa, Ghazalia; Bouziane-Nedjadi, Karim; Rigottier-Gois, Lionel; Touhami, Mahmoud; Pochart, Philippe Article ISI JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION (2008)
Conditions of bifidobacterial colonization in preterm infants: A prospective analysis Butel, Marie-Jose; Suau, Antonia; Campeotto, Florence; Magne, Fabien; Aires, Julio; Ferraris, Laurent; Kalach, Nicolas; Leroux, Bernard; Dupont, Christophe Article ISI JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION (2007)
A longitudinal study of infant faecal microbiota during weaning Magne, Fabien; Suau, Antonia; Mangin, Irene; Pochart, Philippe Article ISI FEMS MICROBIOLOGY ECOLOGY (2006)
Characterization of human intestinal bifidobacteria using competitive PCR and PCR-TTGE Mangin, I; Suau, A; Magne, F; Garrido, D.; Gotteland M.; Neut, C; Pochart, P Article ISI SCOPUS FEMS MICROBIOLOGY ECOLOGY (2006)
Low species diversity and high interindividual variability in faeces of preterm infants as revealed by sequences of 16S rRNA genes and PCR-temporal temperature gradient gel electrophoresis profiles Magne, Fabien; Abely, Michel; Boyer, Frederique; Pochart, Philippe; Suau, Antonia Article ISI FEMS MICROBIOLOGY ECOLOGY (2006)
Fecal microbial community in preterm infants Suau, A; Pochart, P Article ISI JOURNAL OF PEDIATRIC GASTROENTEROLOGY AND NUTRITION (2005)


Alterations in human milk leptin and insulin are associated with early changes in the infant intestinal microbiome Letter ISI SCOPUS AMERICAN JOURNAL OF CLINICAL NUTRITION (2017)


Exploring deleterious outcomes of fungal colonization of the placenta by Pneumocystis for the mother-fetus binomia Vargas, Sergio Proyecto (2024)
Involvement of the lung microbiome in the combined harmful effects of cigarette smoke and microplastics on the respiratory mucosa Magne, Fabien Proyecto (2023)
Development ofhybridizationDNA capture toassess microbialdiversity andnitratemetabolism inlung tissuesamples Proyecto (2021)
Role of the commensal microbiota in lung mucus production FONDECYT (1191311) Proyecto 2019-2022 Inv. Responsable
FONDECYT POSTDOCTORADO Pamela Morales Role of the intestinal microbiota in the development of preeclampsia. FONDECYT (3180324) Proyecto 2018-2021 Inv. Patrocinante
Red CONICYT/CYTED Obesity and Diabetes=> factors of risk and new pathogen and predictive markers PCI (918PTE0540) Proyecto 2018-2020 Coinvestigador(a)
Recognition of the Primary Infection by Pneumocystis in infants=> A silent threat to public health (Grant ERANet LAC) 7° PROGRAMA MARCO COMUNIDAD ECONÓMICA EUROPEA PCI (Grant ELAC) Proyecto 2016-2018 Coinvestigador(a)
Dengue virus replication and stress of the endoplasmic reticulum IRD (no codigo) Proyecto 2012-2014 Inv. Responsable
Caracterización de la diversidad bacteriana asociada al tracto intestinal del salmón y desarrollo de métodos moleculares Ecos-Sud (C07B04) Proyecto 2008-2010 Investigador(a)
PREMAFLORA Agence National de la Recherche, Francia. (ANR-07-PNRA-0028) Proyecto 2008-2012 Investigador(a)
EMIBIO Agence de l’environnement et de la maitrise de l’energie, Francia (0675C0085) Proyecto 2007-2010 Investigador(a)


The Elevated Rate of Cesarean Section and Its Contribution to Non-Communicable Chronic Diseases in Latin America: The Growing Involvement of the Microbiota Review ISI SCOPUS Frontiers in Pediatrics (2017)

Jaime Romero

Profesor Asociado

Alimentos

UNIVERSIDAD DE CHILE

Santiago, Chile

Miguel O'Ryan

Profesor Titular

Programa de Microbiologia y Micologia

FACULTAD DE MEDICINA, UNIVERSIDAD DE CHILE

Santiago, Chile

roberto vidal

Head of Pathogenic Escherichia coli Laboratory

Director Microbiology and Mycology Program

UNIVERSIDAD DE CHILE

Santiago, Chile

Cecilia Tapia

Médico Asesor en Microbiología y Biología Molecular

Laboratorio

Clínica Dávila

SANTIAGO, Chile

SERGIO BUCAREY

Profesor Asociado

Departamento de Ciencias Biológicas Animales

UNIVERSIDAD DE CHILE, FACULTAD DE CIENCIAS VETERINARIAS Y PECUARIAS

Santiago, Chile

Romilio Espejo

UNIVERSIDAD DE CHILE, INTA

Santiago, Chile

Carolina Ponce

Lab Manager Lab Infecciones Rspiratorias

Microbiología Y MIcología

UNIVERSIDAD DE CHILE

Santiago, Chile

CRISTIAN COVARRUBIAS

PROFESOR ASOCIADO

INSTITUTO DE INVESTIGACIÓN EN CIENCIAS ODONTOLÓGICAS

UNIVERSIDAD DE CHILE

SANTIAGO, Chile

Cristian Araneda

Associate Professor

Produccion Animal

UNIVERSIDAD DE CHILE, FACULTAD DE CIENCIAS AGRONÓMICAS

Santiago, Chile

Rafael Opazo

Profesor asistente

Instituto de Nutrición y Tecnología de los alimentos

University of Chile

Santiago, Chile

Veronica Olate

INVESTIGADOR ASISTENTE

Departamento de Investigaciones Interdisciplinarias

Universidad de Talca

TALCA, Chile

Carmen Feijóo

Profesor asociado

UNIVERSIDAD ANDRES BELLO

Santiago, Chile

Paula Rodas

Scientific affairs

Agencia Chilena para la Inocuidad Alimentaria (ACHIPIA)

Santiago, Chile

Angelica Reyes

Profesor Asociado

INTA UNIVERSIDAD DE CHILE

Santiago, Chile

Caroll Beltrán

Profesor Asociado, Investigador Principal

Bioquímica Clinica e Inmunología

Universidad de Concepción, Facultad de Farmacia

Concepción, Chile

Daniel Garrido

Associate Professor

Chemical and Bioprocess Engineering

Pontificia Universidad Católica de Chile

Santiago, Chile

Magaly Toro

Profesor Asistente

UNIVERSIDAD DE CHILE

Chile

Cristian Valdés

Investigador

CIEAM

Universidad Católica del Maule

Talca, Chile

Fabien MAGNE

Profesor asociado

Instituto de Ciencias Biomédicas (ICBM)

UNIVERSIDAD DE CHILE

Santiago, Chile

Mario Caruffo

Investigador Post-doctoral

Inmunología en Peces

Universidad Andrés Bello

Santiago, Chile

Paola Navarrete

Associate Professor

INTA

Universidad de Chile

Santiago, Chile

Maria Bustamante

Profesora Asistente

Facultad de Medicina

Universidad de Chile

Santiago , Chile

Jaime Romero

Profeasor Asociado

INTA

Universidad de Chile

Santiago, Chile

Dante Travisany

Profesor Asociado

Facultad de Ingeniería y Negocios

Universidad de Las Américas

Santiago, Chile

Bielka Carvajal

Prof. Asistente

Promoción de la Salud de la Mujer y el Recién Nacido

Universidad de Chile

Santiago, Chile

Cristian Hernández

Assistant Professor

Gastroenterology

Pontificia Universidad Católica de Chile

Santiago, Chile

Néstor Correa

Profesor instructor

FM CAS-UDD

Universidad del Desarrollo

Santiago, Chile

Juan Ugalde

Assistant Professor

Facultad de Ciencias de la Vida

Universidad Andrés Bello

Santiago, Chile

MARTIN GOTTELAND

Profesor Titular

Facultad de Medicina

Universidad de Chile

Santiago, Chile

Sergio Vargas

Investigador Académico

Universidad de Chile

Santiago, Chile

Francisco Pérez

Coordinador Diagnóstico Molecular

Laboratorio Clínico

Clínica Alemana de Santiago

Santiago, Chile

Carolina Pavez

GASTROENTEROLOGO

GASTROENTEROLOGIA

Pontificia Universidad Católica de Chile

SANTIAGO, Chile

VICTOR GARCIA

Profesor Asistente

Universidad de Chile

Santiago, Chile

Nicolás Ortiz

Residente de Medicina Interna

Departamento de Medicina Interna

Hospital Clínico Universidad de Chile

Santiago, Chile

Hugo Salinas

Profesor asociado

Hospital Clínico U de Chile

Universidad de Chile

Santiago, Chile

José Pino

Profesor Asistente

Universidad Santo Tomás

Talca, Chile

Fabien MAGNE

Líneas de Investigación

Educación

Biologia, CONSERVATOIRE NATIONAL DES ARTS ET METIERS. Francia, 2005

Ecología microbiana, patogenia de los microorganismos y agentes infecciosos, Université Paris Sud, Faculté de Pharmarcie. Francia, 2002

biología celular y fisiología, option microbiología, UNIVERSITÉ BLAISE-PASCAL. Francia, 2000

Experiencia Académica

Profesor asistante Full Time

Asistant profesor Full Time

Profesor asociado Full Time

Experiencia Profesional

Profesor associado

Profesor assistante

Formación de Capital Humano

Article (44)

Letter (1)

Proyecto (11)

Role of the commensal microbiota in lung mucus production

FONDECYT POSTDOCTORADO Pamela Morales Role of the intestinal microbiota in the development of preeclampsia.

Red CONICYT/CYTED Obesity and Diabetes=> factors of risk and new pathogen and predictive markers

Recognition of the Primary Infection by Pneumocystis in infants=> A silent threat to public health (Grant ERANet LAC) 7° PROGRAMA MARCO COMUNIDAD ECONÓMICA EUROPEA

Dengue virus replication and stress of the endoplasmic reticulum

Caracterización de la diversidad bacteriana asociada al tracto intestinal del salmón y desarrollo de métodos moleculares

PREMAFLORA

EMIBIO

Review (1)